
Sentieon最新推送版本为V2020,新版本对TNhaplotyper2模块进行了重大更新,使其能匹配4.1.9版本的Mutect2的结果,并引入了三种新算法:ContaminationModel、OrientationBias和TNfilter。在本版中,已经移除tnhaplfilter。具体更新内容如下:
新添加的功能:
Reduced memory usage when outputting CRAM files.
Maintenance update of the TNseq algorithm.
Added DNBSEQ platform to support BGI sequencers.
Improve speed of umi consensus when not outputting BI/BD tags.
Added support of BGZF compressed interval list files as well as VCF and VCF.gz files.
Modified the type of the AD, QSS and RPA FORMAT field in the VCF.
Override unlimited stack size limit in Linux to prevent Linux bug with thread local storage allocation.
Using an empty interval bed file will result in no processing done, as if the interval had 0 length.
Bug修复:
Added additional error checks and error reporting.
Solved

Sentieon 202010版本对TNhaplotyper2进行重大更新,与Mutect2 4.1.9结果匹配。新增ContaminationModel、OrientationBias和TNfilter算法,移除tnhaplfilter。更新包括内存优化、DNBSEQ平台支持、UMI一致性速度提升等。同时修复多个错误,如处理无序列的BAM文件崩溃问题等。
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