R语言绘图 | 使用scplotter包绘制细胞间通信图-优快云博客

本文链接：https://blog.youkuaiyun.com/kanghua_du/article/details/146885720

原文教程:R语言绘图 | 使用scplotter包绘制细胞间通信图

前言

关于scplotter包，在前面的教程分享过。但是，绝大部分同学，也许就一带而过（PS：包括自己）。其实，很多时候，我们会收藏很多的教程，推文等，但绝大多数都是在“吃灰”。

此教程，我们分享使用scplotter包中<font style="color:rgb(53, 148, 247);">CCCPlot()</font>函数绘制<font style="color:rgb(53, 148, 247);">Cell-Cell Communication Plot</font>。

教程网址：

https://pwwang.github.io/scplotter/reference/CCCPlot.html

code

##'@安装R包remotes::install_github(“pwwang/scplotter”)# ordevtools::install_github(“pwwang/scplotter”)# or using conda#$ conda install pwwang::r-scplotter

1. Usage

CCCPlot( data, plot_type = c(“dot”, “network”, “chord”, “circos”, “heatmap”, “sankey”, “alluvial”), method = c(“aggregation”, “interaction”), magnitude = waiver(), specificity = waiver(), weighted = TRUE, meta_specificity = “sumlog”, split_by = NULL, x_text_angle = 90, link_curvature = 0.2, link_alpha = 0.6, facet_by = NULL, show_row_names = TRUE, show_column_names = TRUE,…)

2. Examples

set.seed(8525)data(cellphonedb_res)CCCPlot(data = cellphonedb_res, plot_type = “network”, legend.position = “none”, theme = “theme_blank”, theme_args = list(add_coord = FALSE))

CCCPlot(cellphonedb_res, plot_type = “chord”)

CCCPlot(cellphonedb_res, plot_type = “heatmap”)

CCCPlot(cellphonedb_res, plot_type = “dot”, weighted = FALSE)

CCCPlot(cellphonedb_res, plot_type = “sankey”)

cellphonedb_res_sub <- cellphonedb_res[ cellphonedb_res$source %in% c(“Dendritic”, “CD14+ Monocyte”),]CCCPlot(cellphonedb_res_sub, plot_type = “dot”, method = “interaction”)