task3a_gmt函数

gmt文件定义

gmt(Gene Matrix Transposed,基因矩阵转置)是多列注释文件,列与列之间都是Tab制表符分割。

  • 第1列: 是基因所属基因集的名字,可以是通路名字,也可以是自己定义的任何名字。
  • 第2列 :一般是描述信息,说明这套基因列表从哪里收集的,也可以为空或者用NA表示。官方提供的格式是URL,也可以是任意字符串。
  • 第3列-第n列: 是基因集内所有基因的名字,有几个写几列。
    每一行的列数可以不一样,主要是基因集内的基因数量不一样。
library(clusterProfiler)
data(gcSample) #加载gcSample数据集

#第一列用X1-X8,第二列无内容用‘NA’代替,第三列-第N列为基因的entrenz id
#文件以制表符分隔开
get_gmt <- function(gcSample,filename)
一个下载请求, 一、请求网址如下: https://console.his.XXX.com/asa/gateway/S00000000000000000000000000000605:VULWorkbenchService/vuln-workbench/servlet/download?dlType=RiskWarningDetailExport&file=riskWarningProcessData&RiskWarningQueryVO={“warningName”%3A"“%2C"rectificationOwner”%3A"“%2C"discovererId”%3A"“%2C"discoverToolCode”%3A[]%2C"orderList"%3A[]%2C"vulnSourceType"%3A[]%2C"warningSlaStatus"%3A[]%2C"warningPriority"%3A[]%2C"warningStatus"%3A[]%2C"hwItVdIds"%3A[]%2C"cautionCount"%3A[]%2C"confirmSlaStatus"%3A[]%2C"discoverOrganizationCode"%3A[]%2C"warningDateStart"%3A"2024-05-22"%2C"warningDateEnd"%3A"2025-05-22"%2C"dimensionSetCode"%3A"ALL"%2C"dimensionTreeCode"%3A"EAMAP"%2C"dimensionCode"%3A"com.XXX.devops.ione"%2C"dimensionLevel"%3A"5"%2C"dimensionType"%3A"0"%2C"dimensionDepth"%3A"5"%2C"delegateTenantIds"%3A"11111111111111111111111111111111%2C88888888888888888888888888888888"%2C"delegateTenantNames"%3A"XXX技术有限公司%2CHIS平台运营商"%2C"warningIds"%3A[]} 请求方法: GET 状态代码: 200 OK 远程地址: 10.116.9.249:443 引荐来源网址政策: strict-origin-when-cross-origin 二、响应标头如下: HTTP/1.1 200 OK Date: Thu, 22 May 2025 12:26:58 GMT Content-Type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet Content-Length: 51267 Connection: keep-alive Keep-Alive: timeout=60 Accept-Ranges: bytes Content-Disposition: attachment; filename=“riskWarningProcessData20250522202658.xlsx” Access-Control-Allow-Origin: https://console.his.XXX.com Access-Control-Expose-Headers: x-login-url, x-csrf-token Access-Control-Allow-Methods: GET,POST,PUT,DELETE,OPTIONS Access-Control-Max-Age: 1800 Access-Control-Allow-Credentials: true X-Server-Process-Time: 1.1269 X-Upstream-Process-Time: 1.1259 X-ALB-SERVER: ALB 三、请求标头如下: GET /asa/gateway/S00000000000000000000000000000605:VULWorkbenchService/vuln-workbench/servlet/download?dlType=RiskWarningDetailExport&file=riskWarningProcessData&RiskWarningQueryVO=%7B%22warningName%22%3A%22%22%2C%22rectificationOwner%22%3A%22%22%2C%22discovererId%22%3A%22%22%2C%22discoverToolCode%22%3A%5B%5D%2C%22orderList%22%3A%5B%5D%2C%22vulnSourceType%22%3A%5B%5D%2C%22warningSlaStatus%22%3A%5B%5D%2C%22warningPriority%22%3A%5B%5D%2C%22warningStatus%22%3A%5B%5D%2C%22hwItVdIds%22%3A%5B%5D%2C%22cautionCount%22%3A%5B%5D%2C%22confirmSlaStatus%22%3A%5B%5D%2C%22discoverOrganizationCode%22%3A%5B%5D%2C%22warningDateStart%22%3A%222024-05-22%22%2C%22warningDateEnd%22%3A%222025-05-22%22%2C%22dimensionSetCode%22%3A%22ALL%22%2C%22dimensionTreeCode%22%3A%22EAMAP%22%2C%22dimensionCode%22%3A%22com.XXX.devops.ione%22%2C%22dimensionLevel%22%3A%225%22%2C%22dimensionType%22%3A%220%22%2C%22dimensionDepth%22%3A%225%22%2C%22delegateTenantIds%22%3A%2211111111111111111111111111111111%2C88888888888888888888888888888888%22%2C%22delegateTenantNames%22%3A%22%E5%8D%8E%E4%B8%BA%E6%8A%80%E6%9C%AF%E6%9C%89%E9%99%90%E5%85%AC%E5%8F%B8%2CHIS%E5%B9%B3%E5%8F%B0%E8%BF%90%E8%90%A5%E5%95%86%22%2C%22warningIds%22%3A%5B%5D%7D HTTP/1.1 Accept: text/html,application/xhtml+xml,application/xml;q=0.9,image/avif,image/webp,image/apng,/;q=0.8,application/signed-exchange;v=b3;q=0.7 Accept-Encoding: gzip, deflate, br, zstd Accept-Language: zh-CN,zh;q=0.9 Connection: keep-alive Cookie: _frid=81291edc9ec445b6a175c06220133f06; iam_grayroute=AD58C955C5C4F9508CDAF98A6C3364C61A60099FADDED4DC; iam_sid_business=2049380137f4fc5b5d91301ee63e38d1d13da6346c71d5e6658d5cec18b96df2d6639648fb0537ec36c9; fingerprintsId=678752da-da25-468a-92cb-778cd8af85f9; idss_cid=678752da-da25-468a-92cb-778cd8af85f9; cbg_wp_lang=zh_CN; HW3MS_think_language=zh-cn; hic_app_id=com.XXX.wisedevops; ztsg_ruuid=5dad40bf294eb86d-d0c0-4900-8999-6834a99cee9b; lang=zh; env_token=pro; EnterpriseId=11111111111111111111111111111111; login_flag=in; guest=false; p60089897_currentRoleXXX.paas.portal=default; hic_lang=zh_CN; console_his_XXX_com_asa_gateway_sticky=fb4dd6bee948243543b3c87a422817999f0f14943bd2c43f3a17a8bee7e147a59a2319b020f406557d7a73fc9df6d2ac:3; HW3MS_CONNECT_SESSION=3onbk815tsi2tar4nhonjlv5a6; X-Auth-Token=f676f1996c410ea8e681338085b730c98a45a3f58c68021a; IAM-Csrf-Token=9d534a9aac23e501591909bac6c97ecce19f4f72fc41d686; prod_J_SESSION_ID=2F-D1-8B-54-C6-6C-55-1F-8D-DC-D8-35-4B-56-3C-49-56-FD-D6-CA-E5-A7-7F-1D-4B-8B-C0-51-A9-F5-A3-40-F3-47-12-6A-43-88-9D-0D-95-3E-6B-8A-C3-94-4E-F0-BD-B0-89-4D-C4-54-80-37; prod_agencyID=p60089897; u_depart=%E5%8D%8E%E4%B8%BA%E6%8A%80%E6%9C%AF%2F%E7%BB%88%E7%AB%AFBG%2F%E7%BB%88%E7%AB%AF%E4%BA%91%E6%9C%8D%E5%8A%A1%E9%83%A8%2F%E7%BB%88%E7%AB%AF%E4%BA%91%E6%9C%8D%E5%8A%A1%E7%A5%A5%E4%BA%91%E4%B8%8E%E5%A4%A7%E6%95%B0%E6%8D%AE%E5%B9%B3%E5%8F%B0%E9%83%A8%2F%E7%BB%88%E7%AB%AF%E4%BA%91%E6%9C%8D%E5%8A%A1%E5%9F%BA%E7%A1%80%E4%BA%91%E5%B9%B3%E5%8F%B0%E5%BC%80%E5%8F%91%E9%83%A8; prod_cftk=AOB 四、根据上述一二三点编写一个python脚本每天5点请求下载一次。
05-23
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