7、purge_haplogs 基因组去冗余

1、下载安装 https://bitbucket.org/mroachawri/purge_haplotigs/wiki/Install

1、Dependencies (in no particular order)

bedtools

$ sudo apt install bedtools
$ bedtools --version
bedtools v2.26.0

samtools

$ sudo apt install samtools
$ samtools --version
samtools 1.7
Using htslib 1.7-2
Copyright (C) 2018 Genome Research Ltd.

Rscript

$ sudo apt install r-base r-base-dev

# on a new install we wont have the required R library 'ggplot2' installed
$ sudo su - -c "R -e \"install.packages('ggplot2', repos='http://cran.rstudio.com/')\""

Minimap2

# download the latest release from https://github.com/lh3/minimap2/releases (currently v2