09单细胞分析2025-cellranger-ATAC2.1.0上游分析-软件下载安装和环境配置

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已于 2025-04-23 09:57:18 修改

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分类专栏：单细胞分析文章标签： linux atac-seq

于 2025-03-26 23:22:12 首次发布

本文链接：https://blog.youkuaiyun.com/2301_82312331/article/details/146507398

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Cell Ranger ATAC - Official 10x Genomics Support

1.ATAC分析的软件下载：Cell Ranger ATAC 2.1.0 (Apr 4, 2022) 下载：

wget -O cellranger-atac-2.1.0.tar.gz "https://cf.10xgenomics.com/releases/cell-atac/cellranger-atac-2.1.0.tar.gz?Expires=1743034982&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=OuXXg~Lgrtn~nN~9zrUlNYtWxiNIY5~E~jt1-K5o9RBbmm9u3J~cu3jXdt6YEZ51T5oRmxkkDwtewm78JmqGNwcR9S-pFLuX~wqI9Z2ILaPURC~q-xZN5JRGVMVvzgEPuloHj1KyiIKfHUwAGP3oTDKd-WdT9zjTvR81aJ2RdBpCrO4uKActC0bY5ipSwQpRfgDkYYhVRDsf92rL3TKJNBwLdR2NmKnA-E~y0FNgWSnTFPf6kvTAb3CeatGvan1W7ezFmBIdSg3Tcw-Hr00DQ1xp6DUSj~h8oCR4j3Tdt4drb~~crVN5s9DnegWRyisG-eFabu02rYXBn1VeBxI-HA__"

或者

直接下载

Download for Linux 64-bit (tar.gz)

File size: 528 MB

安装：

https://www.10xgenomics.com/support/software/cell-ranger-atac/latest/tutorials/installation

tar -xzvf cellranger-atac-2.1.0.tar.gz

2.参考基因下载

人类：

Human reference (GRCh38) - 2024-A

Human reference (GRCh38) dataset required for Cell Ranger ATAC

Download Human Reference

File size: 14 GB

或者

wget "https://cf.10xgenomics.com/supp/cell-arc/refdata-cellranger-arc-GRCh38-2024-A.tar.gz"

小鼠：

Mouse reference (GRCm39) - 2024-A

Mouse reference (GRCm39) required for Cell Ranger ATAC.

Download Mouse Reference

File size: 13 GB

或者

wget "https://cf.10xgenomics.com/supp/cell-arc/refdata-cellranger-arc-GRCm39-2024-A.tar.gz"

自定义的物种：斑马鱼

Creating a Reference Package with cellranger-atac mkref - Official 10x Genomics Support

安装

tar -xzvf refdata-cellranger-arc-GRCh38-2020-A-2.0.0.tar.gz

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