RunUMAP报错Error in uwot(X = X, n_neighbors = n_neighbors, n_components = n_components, : n_neighb

> pbmc <- RunUMAP(object = pbmc, reduction = 'lsi', dims = 2:15)
22:05:19 UMAP embedding parameters a = 0.9922 b = 1.112
22:05:19 Read 16 rows and found 14 numeric columns
Error in uwot(X = X, n_neighbors = n_neighbors, n_components = n_components,  : 
  n_neighbors must be smaller than the dataset size

#错误原因,没有这么多的维度,所以需要将n.neighbors设置小一点,n.neighbors默认是30

pbmc <- RunUMAP(object = pbmc, reduction = 'lsi', dims = 2:15,n.neighbors=15)#即可正常运行

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