蛋白质组学DeepRescore报错

最新推荐文章于 2025-08-05 17:13:28 发布

十年后一起潇

最新推荐文章于 2025-08-05 17:13:28 发布

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文章标签： docker linux 容器

本文链接：https://blog.youkuaiyun.com/weixin_44307871/article/details/125549638

本文记录了在使用DeepRescore工具过程中遇到的权限错误问题及其解决方案。问题表现为执行pga_fdr_control(d2)进程时出现错误退出状态(126)，通过调整权限设置最终得以解决。

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Error executing process > 'pga_fdr_control (d2)'

Caused by:
Process `pga_fdr_control (d2)` terminated with an error exit status (126)

Command executed:

mkdir peptide_level psm_level
Rscript /home/huwanli/下载/DeepRescore-master/bin/got_pga_input.R features.txt comet ./d2-rawPSMs.txt
Rscript /home/huwanli/下载/DeepRescore-master/bin/calculate_fdr.R ./ d2 /home/huwanli/下载/DeepRescore-master/bin/protein.pro-ref.fasta

Command exit status:
126

Command output:
(empty)

Command error:
docker: Got permission denied while trying to connect to the Docker daemon socket at unix:///var/run/docker.sock: Post "http://%2Fvar%2Frun%2Fdocker.sock/v1.24/containers/create?name=nxf-8lhGQHstkyYcILUehOTm4eYX": dial unix /var/run/docker.sock: connect: permission denied.
See 'docker run --help'.

Work dir:
/home/huwanli/下载/DeepRescore-master/work/34/bb95b877334adcb2b4ee978c9d4733

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`

最后是因为权限管理不够所致修改了之后就可以了，输入sudo -s进入高级管理权限