script engine

最新推荐文章于 2024-09-24 08:09:25 发布

翻译最新推荐文章于 2024-09-24 08:09:25 发布 · 1k 阅读

本文介绍了几种用于生物信息学领域的特定工作流工具，包括E-BioFlow、RShell及ProPHAnE等。这些工具分别侧重于流程控制、数据流管理和资源视角，并支持如Perl脚本、R脚本及多种服务接口。ProPHAnE是一款专门用于蛋白质组学数据注释的Perl脚本工作流，即将发布更新版本，新版本将具备更多自动化功能。

e-BioFlow

E-BioFlow enables the scientists to design workflow using three different perspectives: control flow, data flow and resource perspective. The workflow tool is based on the Yawl engine and has support for BioMOBY and WSDL services and Perl and R scripts.

RShell

http://ewi.utwente.nl/~biorange/rshell - The RShell project is a plugin for the Taverna workflow system. It enables one to execute R scripts within the Taverna workflow system. The RShell processor is built on the RServe project. For more info:

ProPHAnE

ProPHAnE: Proteomics result Pruning and Homology group Annotation Engine A perl script based workflow for annotation of protein data coming from the 'Mascot' (Matrix Science) and 'Scaffold' (Proteome Software) pipeline.

Coming soon: Prophane 2, "a much improved and extended version of Prophane based on HTML5, PHP and MySQL. Most importantly, the pipeline includes now functional predictions on profile Hidden Markov models (HMMs), is fully-automated, and can be controlled via a highly intuitive and user-friendly interface." (Stephan Fuchs)