“
[{
"resource": "/home/wrd/WYH/Brain/projects/scripts/brain_analysis.py",
"owner": "Pylance5",
"code": {
"value": "reportMissingImports",
"target": {
"$mid": 1,
"path": "/microsoft/pylance-release/blob/main/docs/diagnostics/reportMissingImports.md",
"scheme": "https",
"authority": "github.com"
}
},
"severity": 4,
"message": "无法解析导入“braian”",
"source": "Pylance",
"startLineNumber": 5,
"startColumn": 8,
"endLineNumber": 5,
"endColumn": 14,
"origin": "extHost1"
},{
"resource": "/home/wrd/WYH/Brain/projects/scripts/brain_analysis.py",
"owner": "Pylance5",
"code": {
"value": "reportMissingImports",
"target": {
"$mid": 1,
"path": "/microsoft/pylance-release/blob/main/docs/diagnostics/reportMissingImports.md",
"scheme": "https",
"authority": "github.com"
}
},
"severity": 4,
"message": "无法解析导入“braian.config”",
"source": "Pylance",
"startLineNumber": 6,
"startColumn": 8,
"endLineNumber": 6,
"endColumn": 21,
"origin": "extHost1"
},{
"resource": "/home/wrd/WYH/Brain/projects/scripts/brain_analysis.py",
"owner": "Pylance5",
"code": {
"value": "reportMissingImports",
"target": {
"$mid": 1,
"path": "/microsoft/pylance-release/blob/main/docs/diagnostics/reportMissingImports.md",
"scheme": "https",
"authority": "github.com"
}
},
"severity": 4,
"message": "无法解析导入“braian.plot”",
"source": "Pylance",
"startLineNumber": 7,
"startColumn": 8,
"endLineNumber": 7,
"endColumn": 19,
"origin": "extHost1"
},{
"resource": "/home/wrd/WYH/Brain/projects/scripts/brain_analysis.py",
"owner": "Pylance5",
"code": {
"value": "reportMissingImports",
"target": {
"$mid": 1,
"path": "/microsoft/pylance-release/blob/main/docs/diagnostics/reportMissingImports.md",
"scheme": "https",
"authority": "github.com"
}
},
"severity": 4,
"message": "无法解析导入“braian.stats”",
"source": "Pylance",
"startLineNumber": 8,
"startColumn": 8,
"endLineNumber": 8,
"endColumn": 20,
"origin": "extHost1"
}]
”的同时，我的:
"
wrd@wrd-ThinkPad-X240:~$ pip list
Package Version
----------------------------- --------------------
actionlib 1.14.3
angles 1.9.14
anyio 4.5.2
apturl 0.5.2
argon2-cffi 25.1.0
argon2-cffi-bindings 21.2.0
arrow 1.4.0
asttokens 3.0.1
async-lru 2.0.4
attrs 25.3.0
autobahn 17.10.1
Automat 0.8.0
babel 2.17.0
backcall 0.2.0
backports.zoneinfo 0.2.1
bcrypt 3.1.7
beautifulsoup4 4.14.3
bleach 6.1.0
blinker 1.4
bondpy 1.8.7
breezy 3.0.2
Brian2 2.5.1
Brlapi 0.7.0
camera-calibration 1.17.0
camera-calibration-parsers 1.12.1
catkin 0.8.12
catkin-pkg 1.0.0
catkin-pkg-modules 1.0.0
cbor 1.0.0
certifi 2019.11.28
cffi 1.17.1
chardet 3.0.4
charset-normalizer 3.4.4
Click 7.0
colorama 0.4.3
comm 0.2.3
command-not-found 0.3
configobj 5.0.6
constantly 15.1.0
controller-manager 0.20.0
controller-manager-msgs 0.20.0
cryptography 2.8
cupshelpers 1.0
cv-bridge 1.16.2
cycler 0.10.0
Cython 0.29.14
czifile 2019.7.2.1
dbus-python 1.2.16
debugpy 1.8.17
decorator 5.2.1
defer 1.0.6
defusedxml 0.6.0
Deprecated 1.2.7
diagnostic-analysis 1.12.1
diagnostic-common-diagnostics 1.12.1
diagnostic-updater 1.12.1
distro 1.4.0
distro-info 0.23+ubuntu1.1
docutils 0.16
dulwich 0.19.15
duplicity 0.8.12.0
dynamic-reconfigure 1.7.6
empy 3.3.2
entrypoints 0.3
exceptiongroup 1.3.1
executing 2.2.1
fasteners 0.14.1
fastimport 0.9.8
fastjsonschema 2.21.2
fqdn 1.5.1
future 0.18.2
gazebo_plugins 2.9.3
gazebo_ros 2.9.3
gencpp 0.7.2
geneus 3.0.0
genlisp 0.4.18
genmsg 0.6.1
gennodejs 2.0.2
genpy 0.6.18
gevent 24.2.1
gpg 1.13.1
greenlet 3.1.1
h11 0.16.0
httpcore 1.0.9
httplib2 0.14.0
httpx 0.28.1
hyperlink 19.0.0
idna 2.8
image-geometry 1.16.2
imagecodecs 2023.3.16
imageio 2.35.1
importlib_metadata 8.5.0
importlib_resources 6.4.5
incremental 16.10.1
interactive-markers 1.12.2
ipykernel 6.29.5
ipython 8.12.3
ipywidgets 8.1.8
isoduration 20.11.0
jedi 0.19.2
Jinja2 3.1.6
joint-state-publisher 1.15.2
joint-state-publisher-gui 1.15.2
json5 0.12.1
jsonpointer 3.0.0
jsonschema 4.23.0
jsonschema-specifications 2023.12.1
jupyter 1.1.1
jupyter_client 8.6.3
jupyter-console 6.6.3
jupyter_core 5.8.1
jupyter-events 0.10.0
jupyter-lsp 2.3.0
jupyter_server 2.14.2
jupyter_server_terminals 0.5.3
jupyterlab 4.3.8
jupyterlab_pygments 0.3.0
jupyterlab_server 2.28.0
jupyterlab_widgets 3.0.16
keyring 18.0.1
kiwisolver 1.0.1
language-selector 0.1
laser-geometry 1.6.8
launchpadlib 1.10.13
lazr.restfulclient 0.14.2
lazr.uri 1.0.3
lazy_loader 0.4
lockfile 0.12.2
louis 3.12.0
lz4 3.0.2+dfsg
macaroonbakery 1.3.1
Mako 1.1.0
MarkupSafe 2.1.5
matplotlib 3.1.2
matplotlib-inline 0.1.7
message-filters 1.17.4
mistune 3.1.4
monotonic 1.5
mpi4py 3.0.3
mpmath 1.3.0
narwhals 1.42.1
nbclient 0.10.1
nbconvert 7.16.6
nbformat 5.10.4
nest-asyncio 1.6.0
netifaces 0.10.4
networkx 3.1
nose 1.3.7
notebook 7.3.3
notebook_shim 0.2.4
numpy 1.24.4
oauthlib 3.1.0
olefile 0.46
opencv-python 4.12.0.88
overrides 7.7.0
packaging 25.0
paho-mqtt 2.1.0
pandas 2.0.3
pandocfilters 1.5.1
paramiko 2.6.0
parso 0.8.5
pexpect 4.6.0
pickleshare 0.7.5
pillow 10.4.0
pip 25.0.1
pkgutil_resolve_name 1.3.10
platformdirs 4.3.6
plotly 6.5.0
prometheus_client 0.21.1
prompt_toolkit 3.0.52
protobuf 3.6.1
psutil 5.5.1
ptyprocess 0.7.0
pure_eval 0.2.3
py-ubjson 0.14.0
pyasn1 0.4.2
pyasn1-modules 0.2.1
pycairo 1.16.2
pycparser 2.23
pycryptodomex 3.6.1
pycups 1.9.73
pydot 1.4.1
PyGithub 1.43.7
Pygments 2.19.2
PyGObject 3.36.0
PyHamcrest 1.9.0
PyJWT 1.7.1
pymacaroons 0.13.0
PyNaCl 1.3.0
PyOpenGL 3.1.0
pyOpenSSL 19.0.0
pyparsing 2.4.6
pypng 0.0.20
PyQRCode 1.2.1
PyQt5 5.14.1
pyRFC3339 1.1
python-apt 2.0.1+ubuntu0.20.4.1
python-dateutil 2.9.0.post0
python-debian 0.1.36+ubuntu1.1
python-gitlab 2.0.1
python-gnupg 0.4.5
python-json-logger 4.0.0
python-qt-binding 0.4.6
python-snappy 0.5.3
PyTrie 0.2
pytz 2025.2
PyWavelets 1.4.1
pyxdg 0.26
PyYAML 5.3.1
pyzmq 27.1.0
qt-dotgraph 0.4.5
qt-gui 0.4.5
qt-gui-cpp 0.4.5
qt-gui-py-common 0.4.5
referencing 0.35.1
reportlab 3.5.34
requests 2.32.4
requests-unixsocket 0.2.0
resource-retriever 1.12.10
rfc3339-validator 0.1.4
rfc3986-validator 0.1.1
roman 2.0.0
rosbag 1.17.4
rosboost-cfg 1.15.10
rosclean 1.15.10
roscreate 1.15.10
rosdep-modules 0.25.1
rosdistro 1.0.1
rosdistro-modules 1.0.1
rosgraph 1.17.4
rosinstall 0.7.8
rosinstall-generator 0.1.23
roslaunch 1.17.4
roslib 1.15.10
roslint 0.12.0
roslz4 1.17.4
rosmake 1.15.10
rosmaster 1.17.4
rosmsg 1.17.4
rosnode 1.17.4
rosparam 1.17.4
rospkg 1.6.0
rospkg-modules 1.6.0
rospy 1.17.4
rosservice 1.17.4
rostest 1.17.4
rostopic 1.17.4
rosunit 1.15.10
roswtf 1.17.4
rpds-py 0.20.1
rpm 0.4.0
rqt-action 0.4.11
rqt-bag 0.5.3
rqt-bag-plugins 0.5.3
rqt-console 0.4.14
rqt-dep 0.4.14
rqt-graph 0.4.16
rqt-gui 0.5.5
rqt-gui-py 0.5.5
rqt-image-view 0.4.19
rqt-launch 0.4.10
rqt-logger-level 0.4.13
rqt-moveit 0.5.13
rqt-msg 0.4.12
rqt-nav-view 0.5.8
rqt-plot 0.4.16
rqt-pose-view 0.5.13
rqt-publisher 0.4.12
rqt-py-common 0.5.5
rqt-py-console 0.4.12
rqt-reconfigure 0.5.7
rqt-robot-dashboard 0.5.8
rqt-robot-monitor 0.5.15
rqt-robot-steering 0.5.14
rqt-runtime-monitor 0.5.10
rqt-rviz 0.7.2
rqt-service-caller 0.4.12
rqt-shell 0.4.13
rqt-srv 0.4.11
rqt-tf-tree 0.6.5
rqt-top 0.4.11
rqt-topic 0.4.15
rqt-web 0.4.11
rviz 1.14.26
scikit-image 0.21.0
scipy 1.10.1
SecretStorage 2.3.1
Send2Trash 1.8.3
sensor-msgs 1.13.2
service-identity 18.1.0
setuptools 45.2.0
simplejson 3.16.0
sip 4.19.21
six 1.14.0
smach 2.5.3
smach-ros 2.5.3
smclib 1.8.7
sniffio 1.3.1
soupsieve 2.7
stack-data 0.6.3
sympy 1.13.3
systemd-python 234
terminado 0.18.1
tf 1.13.4
tf-conversions 1.13.4
tf2-geometry-msgs 0.7.10
tf2-kdl 0.7.10
tf2-py 0.7.10
tf2-ros 0.7.10
tifffile 2023.7.10
tinycss2 1.2.1
tomli 2.3.0
topic-tools 1.17.4
tornado 6.4.2
traitlets 5.14.3
Twisted 18.9.0
txaio 2.10.0
typing_extensions 4.13.2
tzdata 2025.2
u-msgpack-python 2.1
ubuntu-drivers-common 0.0.0
ubuntu-pro-client 8001
ufw 0.36
unattended-upgrades 0.1
uri-template 1.3.0
urllib3 1.25.8
usb-creator 0.3.7
vcstools 0.1.42
wadllib 1.3.3
wcwidth 0.2.14
webcolors 24.8.0
webencodings 0.5.1
websocket 0.2.1
websocket-client 1.8.0
wheel 0.34.2
widgetsnbextension 4.0.15
wrapt 1.11.2
wsaccel 0.6.2
wstool 0.1.18
xacro 1.14.20
xkit 0.0.0
zipp 3.20.2
zope.event 5.0
zope.interface 4.7.1
wrd@wrd-ThinkPad-X240:~$ python3 --version
Python 3.8.10
wrd@wrd-ThinkPad-X240:~$ pip install braian
Defaulting to user installation because normal site-packages is not writeable
ERROR: Could not find a version that satisfies the requirement braian (from versions: none)
ERROR: No matching distribution found for braian
wrd@wrd-ThinkPad-X240:~$
"
https://pypi.org/project/braian/：
“
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braian 1.0.5
pip install braian
Latest version
Released: Mar 11, 2025
A python library for easy navigation, visualisation, and analysis of whole-brain quantification data.
Project description
Project details
Release history
Download files
Project description
braian logo BraiAn
PyPI - Version status-badge
Installation
Once you are in an active python>=3.11,<3.14 environment, you can run:
python3 -m pip install braian
Citing
If you use BraiAn in your work, please cite the paper below, currently in pre-print:
Chiaruttini, N., Castoldi, C. et al. ABBA, a novel tool for whole-brain mapping, reveals brain-wide differences in immediate early genes induction following learning. bioRxiv (2024).
https://doi.org/10.1101/2024.09.06.611625
Building
Prerequisites
git
Poetry or venv/conda/pyenv/pyenv-win to manage dependencies.
Windows instructions assume that you configured the PATH and PATHEXT variables with its command-line program location (e.g. git or pip). If you can't/didn't, you can juxtapose the path-to-exectuable to the respective commands (e.g., C:\Python311\python instead of python).
If you don't know how, we recommend using Scoop.
Step 1: clone the repository
git clone https://codeberg.org/SilvaLab/BraiAn.git /path/to/BraiAn
Step 2: install
with Poetry
cd /path/to/BraiAn
poetry install # --with docs, to install documentation dependencies
# --with dev, to install basic dependencies to work on ipython
Poetry will automatically create a virtual environment in which it installs all the dependencies.
If, instead, you want to manage the environment yourself, Poetry uses the one active during the installation.
with pip
Requires python>=3.11,<3.14.
pip install -e /path/to/BraiAn
Note: installing with pip doesn't assure to install the same version of the dependencies used by developers to run and test braian.
Help
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最新发布
本文解决了一个具体的问题：在2022年10月12日尝试安装阿里云最新的Python SDK API时遇到错误。通过将命令从 'pip install alibabacloud-ecs20140526' 更改为 'pip3 install alibabacloud-ecs20140526' 成功解决了该问题。
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