make_average_surface

USAGE: make_average_surface

Required Arguments
–subjects …
: or declare subjects in SUBJECTS env var
–fsgd fsgdfile : get subject list from fsgd

Optional Arguments
–out : default name is ‘average’
–sdir <SUBJECTS_DIR to use instead of the one in the env>
–sd : same as --sdir
–sd-out topdir : put data here
–xform <transform_fname> : filename of transform file
–ico : specify icosahedron number, default is 7 (ic7.tri)
–surf-reg : alternative registration surface
–lh : only do left hemi (default is to do both)
–rh : only do right hemi (default is to do both)
default: sphere.reg
–force : overwrite existing average subject data
–no-annot : do not use annotation when making template tif
–template-only : useful when creating iterative atlases
–no-template-only : turns off --template-only
–no-cortex-label : do not create ?h.cortex.label
–annot annotname <–annot annotname > : supply list of annots to use (default )
–meas measname <–meas measname > : supply list of meass to use (default )
–no-surf2surf : use old parametric surface method (may give big faces at the poles)

–help : short descriptive help
–no-symlink : do not use symbolic links (just copy files)
–no-lik : same as --no-symlink
–version : script version info
–echo : enable command echo, for debug
–debug : same as --echo

type:
make_average_surface --ico 4 --out average4 --subjects sub-sub01 sub-sub02