前言
今天小编给大家介绍的是TUTU(https://www.cloudtutu.com/)网站上新添的Lefse分析,即LDA Effect Size分析。咱之前有上过这个分析(lefse),但是只能画出LDA值柱状图,今天新添的工具lefse2基本可以实现完整的分析内容,包括LDA值柱状图、物种分类分支图、组间丰度柱状图等等。
Lefse分析文献应用举例:
Fig. 7 The main taxa of bacteria that were different in HMG vs. SMG vs. FMG. a: Cladogram of the main taxa of mi-crobiota that were different on the basis of LEfSe analysis. b: LEfSe analysis (taxa with LDA score > 4). (The different dietary sugars modulate the composition of the gut microbiota in honeybee during overwintering)
Fig.2 The linear discriminant analysis (LDA) effect size (LEfSe) was used to identify the biomarkers with significant differences between the two groups: c 4HF vs 4 AM and d 4HF vs 4SV. Values are presented as mean ± SEM. *P <