seq
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wanguan2000
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冰箱 电视
http://www.360buy.com/product/527764.htmlhttp://www.360buy.com/product/337556.htmlhttp://www.coo8.com/product/146338.html http://www.52dianying.com/player/index204901-0-0.html原创 2012-01-08 21:44:52 · 252 阅读 · 0 评论 -
intersectBed
$ cat A.bedchr1 100200chr1 1000 2000$ cat B.bedchr1 101201chr1 120220$ intersectBed –a A.bed –b B.bed –cchr1 1002002chr1 1000 2000 0原创 2011-11-06 21:10:11 · 471 阅读 · 0 评论 -
MAPQ should be 0 for unmapped read.
Ignoring SAM validation error due to lenient parsing:Error parsing text SAM file. MAPQ should be 0 for unmapped read.; File chrm.sam; Line 1477Line: HWI-ST499:5:23:21302:167400#GCCAAT 87 chr...原创 2011-11-06 22:48:41 · 839 阅读 · 0 评论 -
sam提取unmapped seq
__author__ = 'wanguan2000'#coding=utf-8import os.pathimport osimport sysimport refilename = '/home/wanguan2000/pg/myNGS/result_NGS/cui3132/s31_1_s31_2.sam'n = 0m = 0mn = 0mydict ={...原创 2011-11-06 23:16:33 · 303 阅读 · 0 评论 -
haploid genome
http://seqanswers.com/forums/archive/index.php/t-10182.htmlTo my knowledge, FreeBayes is significantly different than other variant detection systems in common use in that it is not limited to the...原创 2011-11-07 21:46:54 · 296 阅读 · 0 评论 -
cohort
Best: multi-sample realignment with known sites and recalibration Finally, if you really want to get the absolute best results, whatever the computational cost, then we recommend doing multipl...原创 2011-11-10 16:43:38 · 181 阅读 · 0 评论 -
Y-chromosome DNA
http://en.wikipedia.org/wiki/Human_Y-chromosome_DNA_haplogrouphttp://www.ranhaer.com/thread-14446-1-1.htmlcomonca.org.cnisogg.org原创 2011-11-14 10:14:38 · 177 阅读 · 0 评论 -
Somatic mutation
http://ghr.nlm.nih.gov/glossary=somaticmutation Your use of "somatic" in this context seems to be different from the standard definition (e.g. see this definition."Germline DNA" is typically...原创 2011-11-25 09:09:34 · 337 阅读 · 0 评论 -
mouse
Comparison of the human and mouse genomes ledto the unexpected result that 40% of the humangenome basepairs can be aligned to the mouse ge-nome at the nucleotide level (Waterston et al. 2002)....原创 2011-12-05 16:39:56 · 140 阅读 · 0 评论
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