Linux rhel6.7 x64 R-3.4.2编译环境安装

配置本地yum源

[root@localhost /]# cp/mnt/hgfs/D/rhel-server-6.7-x86_64-dvd.iso /

[root@localhost /]# mkdir /mnt/cdrom

[root@localhost /]# vi /etc/yum.conf

 

[main]

cachedir=/var/cache/yum/$basearch/$releasever

keepcache=1（这里由0改成1）

debuglevel=2

logfile=/var/log/yum.log

exactarch=1

obsoletes=1

gpgcheck=0（这里由1改成0）

plugins=1

installonly_limit=3

 

[root@localhost /]# vi /etc/yum.repos.d/R.repo

[Server]

name=rhel6server

baseurl=file:///mnt/cdrom

enable=1

gpgcheck=0

 

[root@localhost /]# mount -o loop /rhel-server-6.7-x86_64-dvd.iso/mnt/cdrom/

[root@localhost /]# yum clean all

Loaded plugins: product-id, refresh-packagekit, security,subscription-manager

This system is not registered to Red Hat SubscriptionManagement. You can use subscription-manager to register.

Cleaning repos: Server

Cleaning up Everything

[root@localhost /]# yum makecache

Loaded plugins: product-id, refresh-packagekit, security,subscription-manager

This system is not registered to Red Hat SubscriptionManagement. You can use subscription-manager to register.

Server                                                                                                                                             | 4.1 kB     00:00 ...

Server/group_gz                                                                                                                                     |211 kB     00:00 ...

Server/filelists_db                                                                                                                                | 3.4 MB     00:00 ...

Server/primary_db                                                                                                                                  | 3.1 MB     00:00 ...

Server/other_db                                                                                                                                     |1.3 MB     00:00 ...

Metadata Cache Created

 

创建安装目录以及补丁包目录

[root@localhost /]# mkdir software

[root@localhost /]# cd software/

[root@localhost software]# mkdir ./packages

[root@localhost software]# mkdir R

[root@localhost software]# ll

total 8

drwxr-xr-x. 2 root root 4096 Nov 25 07:47 packages

drwxr-xr-x. 2 root root 4096 Nov 25 07:48 R

[root@localhost software]# cd R

[root@localhost R]# tar -xzvf /mnt/hgfs/D/R-3.4.2.tar.gz

[root@localhost R]# ll

total 4

drwxr-xr-x. 10 501 games 4096 Sep 28 00:04 R-3.4.2

[root@localhost R]# cd R-3.4.2/

[root@localhost R-3.4.2]# ./configure --enable-R-shlib根据这条编译命令查看报错信息并解决

 

Yum安装需要的包

[root@localhost R-3.4.2]# yum install gcc-gfortran -y

[root@localhost R-3.4.2]# yum install gcc gcc-c++ -y

[root@localhost R-3.4.2]# yum install readline-devel -y

[root@localhost R-3.4.2]# yum install libXt-devel -y

[root@localhost R-3.4.2]# yum install zlib-devel -y

[root@localhost R-3.4.2]# yum -y install bzip2-devel

[root@localhost R-3.4.2]# yum -y install xz-devel.x86_64

[root@localhost R-3.4.2]# yum install texinfo.x86_64 -y

[root@localhost R-3.4.2]# yum install texlive.x86_64 -y

[root@localhost R-3.4.2]# yum install -yjava-1.8.0-openjdk-devel.x86_64

 

安装zlib

[root@localhost /]# cd /software/packages/

[root@localhost packages]# tar -xzvf/mnt/hgfs/D/zlib-1.2.8.tar.gz

[root@localhost packages]# cd zlib-1.2.8/

[root@localhost zlib-1.2.8]# ./configure --prefix=/software/packages

 [root@localhostzlib-1.2.8]# make && make install

添加环境变量（建议在R目录下添加或直接在profile里面添加）

[root@localhost R-3.4.2]# exportPATH=/software/packages/bin:$PATH

[root@localhost R-3.4.2]# exportLD_LIBRARY_PATH=/software/packages/lib:$LD_LIBRARY_PATH

[root@localhost R-3.4.2]# export CFLAGS="-fPIC-I/software/packages/include"

[root@localhost R-3.4.2]# export LDFLAGS="-fPIC-L/software/packages/lib"

 

安装bzip2

[root@localhost zlib-1.2.8]# cd /software/packages/

[root@localhost packages]# tar -xzvf /mnt/hgfs/D/bzip2-1.0.6.tar.gz

[root@localhost packages]# cd bzip2-1.0.6/

[root@localhost bzip2-1.0.6]# make CC='gcc -fPIC'

[root@localhost bzip2-1.0.6]# make && make installPREFIX=/software/packages

[root@localhost bzip2-1.0.6]# make -f Makefile-libbz2_so

 

安装lzma

[root@localhost bzip2-1.0.6]# cd ..

 [root@localhostpackages]# tar -xzvf /mnt/hgfs/D/xz-5.2.2.tar.gz

[root@localhost packages]# cd xz-5.2.2/

[root@localhost xz-5.2.2]# ./configure--prefix=/software/packages

[root@localhost xz-5.2.2]# make -j3 && make install

 

安装pcre

[root@localhost xz-5.2.2]# cd ..

[root@localhost packages]# tar -xzvf/mnt/hgfs/D/pcre-8.38.tar.gz

[root@localhost packages]# cd pcre-8.38/

[root@localhost pcre-8.38]# ./configure--prefix=/software/packages

[root@localhost pcre-8.38]# make -j3 && make install

 

解决pcre编码不对问题

[root@localhost pcre-8.38]# ./configure --enable-utf8--prefix=/software/packages

[root@localhost pcre-8.38]# make && make install

 

安装libcurl（支持https版本）

[root@localhost pcre-8.38]# cd ..

[root@localhost packages]# wget --no-check-certificate https://curl.haxx.se/download/curl-7.47.1.tar.gz

[root@localhost packages]# tar -xzvf curl-7.47.1.tar.gz

[root@localhost packages]# cd curl-7.47.1

[root@localhost curl-7.47.1]# ./configure

[root@localhost curl-7.47.1]# make -j3 && makeinstall

至此再执行R的编译能够通过，剩余三个警告缺少插件用6.7yum源安装相应最新版本补丁包但无法解决，应该是版本原因。直接安装不影响使用

[root@localhost R-3.4.2]# make

[root@localhost R-3.4.2]# make install

安装RstudioServer

[root@Rserver Rstudio]# wget https://download2.rstudio.org/rstudio-server-rhel-1.1.383-x86_64.rpm

[root@Rserver Rstudio]# yum install --nogpgcheckrstudio-server-rhel-1.1.383-x86_64.rpm

检查RstudioServer安装状态

[root@Rserver Rstudio]# rstudio-server verify-installation

rstudio-server stop/waiting

rstudio-server start/running, process 89103

 

Rstudio Server hub访问

http://<server-ip>:8787