【持续更新】Awesome Accelerated-MRI-Reconstruction-Papers

#! https://zhuanlan.zhihu.com/p/643451854

Awesome Accelerated-MRI-Reconstruction-Papers

This artical is folked from jkkronk/Accelerated-MRI-Papers: List of Papers in MRI Reconstruction (github.com), and updating in real time.

NOT MAINTAINED

A awesome list of a few papers on MRI reconstruction.

If your paper is not on the list, please feel free to raise an issue or drop me an e-mail.

What is Accelerated MRI-Reconstruction?

MRI is acquiring data in the Fourier domain, called kspace, and to fully sampling the data in kspace is needed to get an accurate image without artefacts. This is a time-consuming task that results in a brain scan taking up to 30 minutes. Accelerated MRI-Reconstruction seeks to reduce the acquisition time to improve efficiency, reduce motion artefacts and improve patient comfort. Accelerated MRI can be done by either introducing new hardware, such as extra receiver coils (called parallel imaging), or apply algorithms for better reconstruction. An excellent detailed introduction can found in fastMRI dataset paper. Below is an example of a fully sampled and undersampled counterpart. MRI-Reconstruction can be compared with super-resolution as the main goal is to estimate unsampled frequencies.

VrCT7w

Yutong Chen have written a great meta review paper on accelerated MRI that can be found here: https://arxiv.org/abs/2112.12744

Supervised Deep Learning Methods

TitleShortYearPDFCODE
Density Compensated Unrolled Networks for Non-Cartesian MRI ReconstructionPDNet2021PDFCODE
Deep J-Sense: Accelerated MRI Reconstruction via Unrolled Alternating OptimizationpMRI reconstruction2021PDFCODE
Ultra-Fast T2-Weighted MR Reconstruction Using Complementary T1-Weighted InformationCombined sequences2021PDFCODE
Multi-Modal MRI Reconstruction with Spatial Alignment NetworkCombined sequences/modalities2021PDFCODE
Joint Frequency and Image Space Learning for Fourier ImagingDo reconstruction in kspace and image space2020PDF
End-to-End Variational Networks for Accelerated MRI ReconstructionE2E Varnet2020PDFCODE
XPDNet for MRI Reconstruction: an Application to the fastMRI 2020 Brain ChallengeSupervised unrolled2020PDF
GrappaNet: Combining Parallel Imaging with Deep Learning for Multi-Coil MRI ReconstructionSupervised kspace2020PDFCODE
GrappaNet: Combining Parallel Imaging with Deep Learning for Multi-Coil MRI ReconstructionSupervised kspace2020PDFCODE
Neumann Networks for Linear Inverse Problems in ImagingSupervised end-to-end reconstruction2019PDFCODE
LORAKI: Autocalibrated Recurrent Neural Networks for Autoregressive MRI Reconstruction in k-SpaceSupervised CNN Kspace2019PDF
Image reconstruction by domain transform manifold learningSupervised Manifold learning2019PDFCODE
KIKI-net: cross-domain convolutional neural networ ks forreconstructing undersampled magnetic resonan ce imagesSupervised CNN2019PDFCODE
Learning a Variational Network for Reconstruction of Accelerated MRI DataSupervised Variational Network2017PDFCODE
A Deep Cascade of Convolutional Neural Networks for MR Image ReconstructionSupervised Cascade Network2017PDFCODE
Deep ADMM-Net for Compressive Sensing MRISupervised and Compressed Sensing (CS)2016PDFCODE

Unsupervised Deep Learning Methods

TitleShortYearPDFCODE
ENSURE: A general approach for unsupervised training of deep image reconstruction algorithmsSURE/GSURE2021PDF
Unsupervised MRI Reconstruction with Generative Adversarial NetworksUnsupervised with GAN2020PDFCODE
Unsupervised Deep Basis Pursuit: Learning inverse problems without ground-truth dataSupervised and Unsupervised end-to-end reconstruction2019PDF

Untrained Methods

TitleShortYearPDFCODE
Unsupervised Deep Basis Pursuit: Learning inverse problems without ground-truth dataDIP2020PDF
Accelerated MRI with Un-trained Neural NetworksUntrained2020PDF

Low Rank Methods

TitleShortYearPDFCODE
LORAKI: Autocalibrated Recurrent Neural Networks for Autoregressive MRI Reconstruction in k-SpaceLearnig LORAKS2019PDF
A General Framework for Compressed Sensing and Parallel MRI Using Annihilating Filter Based Low-Rank Hankel MatrixParallel imaging and Compressed Sensing (CS)2016PDF
Autocalibrated loraks for fast constrained MRI reconstructionLORAKS2015PDF

Prior Based Methods

TitleShortYearPDFCODE
Bayesian Image Reconstruction using Deep Generative ModelsUnsupervised in the sense not trained end-to-end reconstruction2021PDF
Joint reconstruction and bias field correction for undersampled MR imagingVAE reconstruction with Joint biasfield and reconstruction2020PDF
MR Image Reconstruction Using Deep Density PriorsVAE2019PDFCODE

Classical Methods for Parallel Imaging and Compress Sensing

TitleShortYearPDFCODE
ESPIRiT—an eigenvalue approach to autocalibrating parallel MRI: Where SENSE meets GRAPPAParallel imaging2014PDFCODE
Joint image reconstruction and sensitivity estimation in SENSE (JSENSE)Parallel imaging2007PDFCODE
Sparse MRI: The Application of Compressed Sensingfor Rapid MR ImagingCompressed Sensing (CS)2007PDFCODE
Undersampled Radial MRI with Multiple Coils. Iterative Image Reconstruction Using a Total Variation ConstraintCompressed Sensing (CS)2007PDF
Robust Uncertainty Principles: Exact Signal Reconstruction from Highly Incomplete Frequency InformationCompressed Sensing (CS)2004PDFCODE
POCSENSE: POCS-based reconstruction for sensitivity encoded magnetic resonance imagingParallel imaging2004PDFCODE
Generalized autocalibrating partially parallel acquisitions (GRAPPA)Parallel imaging2002PDFCODE
SENSE: sensitivity encoding for fast MRIParallel imaging1999PDFCODE
Simultaneous Acquisition of Spatial Harmonics (SMASH): Fast Imaging with Radiofrequency Coil Arrays Encoded Magnetic Resonance ImagingParallel imaging1997PDF

Uncertainty Estimation

TitleShortYearPDFCODE
Bayesian Uncertainty Estimation of Learned Variational MRI ReconstructionEpistemic Uncertainty Estimation2021PDF
Uncertainty Quantification in Deep MRI ReconstructionUncertainty2021PDF
Sampling possible reconstructions of undersampled acquisitions in MR imagingUncertainty Estimation2020PDF

Robustness

TitleShortYearPDFCODE
Evaluation of the Robustness of Learned MR Image Reconstruction to Systematic Deviations Between Training and Test Data for the Models from the fastMRI ChallengeRobustness in FastMRI2021PDF
Measuring Robustness in Deep Learning Based Compressive SensingRobustness2021PDF
Improving Robustness of Deep-Learning-Based Image ReconstructionRobustness2020PDF
On instabilities of deep learning in image reconstruction and the potential costs of AIRobustness review2019PDFCODE
Scan-specific robust artificial-neural-networks for k-space interpolation (RAKI) reconstruction: Database-free deep learning for fast imagingSupervised CNN Kspace2019PDFCODE

Other

TitleShortYearPDFCODE
A review of deep learning methods for MRI reconstructionReview paper2021PDF
fastMRI+: Clinical Pathology Annotations for Knee and Brain Fully Sampled Multi-Coil MRI DataLesion annotations for fastMRI2021PDFCODE
Data augmentation for deep learning based accelerated MRI reconstruction with limited dataData Augmentation for reconstruction2021PDFCODE
Results of the 2020 fastMRI Challenge for Machine Learning MR Image ReconstructionCompetition results2021PDF
Benchmarking MRI Reconstruction Neural Networks on Large Public DatasetsBenchmark2020PDF
Deep Learning Methods for Parallel Magnetic Resonance Image ReconstructionSurvey2019PDF
fastMRI: An Open Dataset and Benchmarks for Accelerated MRIMachine learning baselines and public dataset2019PDFCODE

Thanks

Thanks to jkkronk/Accelerated-MRI-Papers: List of Papers in MRI Reconstruction (github.com)

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