19185错误解决

协助解决 软件部数据库故障
上午接到消息,反映数据库起不来了

昨天我们有个系统数据库挂了,
 

登上数据库,尝试打开数据库,出现下面的错误


Tue Jul 28 09:17:28 2009
alter database open
Tue Jul 28 09:17:28 2009
LGWR: STARTING ARCH PROCESSES
ARC0 started with pid=16, OS id=2020
Tue Jul 28 09:17:28 2009
ARC0: Archival started
ARC1 started with pid=17, OS id=2488
Tue Jul 28 09:17:28 2009
ARC1: Archival started
LGWR: STARTING ARCH PROCESSES COMPLETE
Tue Jul 28 09:17:28 2009
ARC1: STARTING ARCH PROCESSES
Tue Jul 28 09:17:28 2009
ARC0: Becoming the 'no FAL' ARCH
ARC0: Becoming the 'no SRL' ARCH
Tue Jul 28 09:17:28 2009
ARC2: Archival started
ARC2 started with pid=18, OS id=764
Tue Jul 28 09:17:28 2009
ARC1: STARTING ARCH PROCESSES COMPLETE
ARC1: Becoming the heartbeat ARCH
Tue Jul 28 09:17:28 2009
Errors in file f:/oracle/product/10.2.0/admin/orcl/udump/orcl_ora_1780.trc:
ORA-19815: ??: db_recovery_file_dest_size ?? (? 2147483648 ??) ??? 100.00%, ?? 0 ?????

Tue Jul 28 09:17:28 2009
************************************************************************
You have following choices to free up space from flash recovery area:
1. Consider changing RMAN RETENTION POLICY. If you are using Data Guard,
   then consider changing RMAN ARCHIVELOG DELETION POLICY.
2. Back up files to tertiary device such as tape using RMAN
   BACKUP RECOVERY AREA command.
Tue Jul 28 09:17:29 2009
Errors in file f:/oracle/product/10.2.0/admin/orcl/bdump/orcl_arc0_2020.trc:
ORA-19815: WARNING: db_recovery_file_dest_size of 2147483648 bytes is 100.00% used, and has 0 remaining bytes available.

3. Add disk space and increase db_recovery_file_dest_size parameter to
Tue Jul 28 09:17:29 2009
************************************************************************
   reflect the new space.
You have following choices to free up space from flash recovery area:
4. Delete unnecessary files using RMAN DELETE command. If an operating
1. Consider changing RMAN RETENTION POLICY. If you are using Data Guard,
   system command was used to delete files, then use RMAN CROSSCHECK and
   then consider changing RMAN ARCHIVELOG DELETION POLICY.
   DELETE EXPIRED commands.
2. Back up files to tertiary device such as tape using RMAN
************************************************************************
   BACKUP RECOVERY AREA command.
Tue Jul 28 09:17:30 2009
Errors in file f:/oracle/product/10.2.0/admin/orcl/udump/orcl_ora_1780.trc:
ORA-19809: ???????????
ORA-19804: ???? 29703680 ?????? (? 2147483648 ???)

3. Add disk space and increase db_recovery_file_dest_size parameter to
Tue Jul 28 09:17:30 2009
ARCH: Error 19809 Creating archive log file to 'F:/ORACLE/PRODUCT/10.2.0/FLASH_RECOVERY_AREA/ORCL/ARCHIVELOG/2009_07_28/O1_MF_1_141_U_.ARC'
   reflect the new space.
4. Delete unnecessary files using RMAN DELETE command. If an operating
ARCH: Failed to archive thread 1 sequence 141 (19809)
   system command was used to delete files, then use RMAN CROSSCHECK and
ORA-16038 signalled during: alter database open...
   DELETE EXPIRED commands.
************************************************************************
Tue Jul 28 09:17:30 2009
Errors in file f:/oracle/product/10.2.0/admin/orcl/bdump/orcl_arc0_2020.trc:
ORA-19809: limit exceeded for recovery files
ORA-19804: cannot reclaim 18791424 bytes disk space from 2147483648 limit

Tue Jul 28 09:17:30 2009
ARC0: Error 19809 Creating archive log file to 'F:/ORACLE/PRODUCT/10.2.0/FLASH_RECOVERY_AREA/ORCL/ARCHIVELOG/2009_07_28/O1_MF_1_142_U_.ARC'
ARC0: Failed to archive thread 1 sequence 142 (19809)
ARCH: Archival stopped, error occurred. Will continue retrying
Tue Jul 28 09:17:31 2009
Errors in file f:/oracle/product/10.2.0/admin/orcl/bdump/orcl_arc0_2020.trc:
ORA-16038: log 3 sequence# 142 cannot be archived
ORA-19809: limit exceeded for recovery files
ORA-00312: online log 3 thread 1: 'F:/ORACLE/PRODUCT/10.2.0/ORADATA/ORCL/REDO03.LOG'

Tue Jul 28 09:18:28 2009
ARC0: Archiving not possible: No primary destinations
ARC0: Failed to archive thread 1 sequence 141 (4)
ARCH: Archival stopped, error occurred. Will continue retrying
Tue Jul 28 09:18:28 2009
Errors in file f:/oracle/product/10.2.0/admin/orcl/bdump/orcl_arc0_2020.trc:
ORA-16014: log 2 sequence# 141 not archived, no available destinations
ORA-00312: online log 2 thread 1: 'F:/ORACLE/PRODUCT/10.2.0/ORADATA/ORCL/REDO02.LOG'

Tue Jul 28 09:19:28 2009
ARC1: Archiving not possible: No primary destinations
ARC1: Failed to archive thread 1 sequence 141 (4)
Tue Jul 28 09:19:40 2009
ALTER SYSTEM SET db_recovery_file_dest_size='200G' SCOPE=BOTH;
Tue Jul 28 09:19:55 2009
alter database open
Tue Jul 28 09:19:56 2009
db_recovery_file_dest_size of 204800 MB is 1.01% used. This is a
user-specified limit on the amount of space that will be used by this
database for recovery-related files, and does not reflect the amount of
space available in the underlying filesystem or ASM diskgroup.
Tue Jul 28 09:19:57 2009
Thread 1 advanced to log sequence 144
Thread 1 opened at log sequence 144
  Current log# 2 seq# 144 mem# 0: F:/ORACLE/PRODUCT/10.2.0/ORADATA/ORCL/REDO02.LOG
Successful open of redo thread 1
Tue Jul 28 09:19:58 2009
MTTR advisory is disabled because FAST_START_MTTR_TARGET is not set
Tue Jul 28 09:20:00 2009
SMON: enabling cache recovery
Tue Jul 28 09:20:00 2009
Archiver process freed from errors. No longer stopped
Tue Jul 28 09:20:02 2009
Successfully onlined Undo Tablespace 1.
Tue Jul 28 09:20:02 2009
SMON: enabling tx recovery
Tue Jul 28 09:20:02 2009
Database Characterset is ZHS16GBK
replication_dependency_tracking turned off (no async multimaster replication found)
Starting background process QMNC
QMNC started with pid=19, OS id=2700
Tue Jul 28 09:20:09 2009
Completed: alter database open

 

从上面信息可以看出,在对  redo2.log进行归档的时候,失败了。
Errors in file f:/oracle/product/10.2.0/admin/orcl/bdump/orcl_arc0_2020.trc:
ORA-16014: log 2 sequence# 141 not archived, no available destinations
ORA-00312: online log 2 thread 1: 'F:/ORACLE/PRODUCT/10.2.0/ORADATA/ORCL/REDO02.LOG'

粗略原因是 “ no available destinations”,


再根究其原因,可以看到 有错误
Errors in file f:/oracle/product/10.2.0/admin/orcl/bdump/orcl_arc0_2020.trc:
ORA-19815: WARNING: db_recovery_file_dest_size of 2147483648 bytes is 100.00% used, and has 0 remaining bytes available.

原来是归档空间 2G已经完全使用了,
无法再对联机日志归档,导致无法打开数据库。


解决方法如下:
直接把数据库的归档空间大小放大 即可
把数据库从mount状态打开
startup mount;
alter system set db_recovery_file_dest_size=200G
alter database open;
问题解决。

我已经使用rmats进行可变剪接事件分析,分析结果在/home/cbw/my_result/GSE52415_project/11_rmats_result文件夹中,其中包含四个文件夹: /home/cbw/my_result/GSE52415_project/11_rmats_result/GV_vs_4C /home/cbw/my_result/GSE52415_project/11_rmats_result/4C_vs_8C /home/cbw/my_result/GSE52415_project/11_rmats_result/8C_vs_16C /home/cbw/my_result/GSE52415_project/11_rmats_result/16C_vs_Blastocyst 文件夹内容如下ls -lh /home/cbw/my_result/GSE52415_project/11_rmats_result/4C_vs_8C 总用量 11M -rw-rw-r-- 1 cbw cbw 312K 10月 27 12:53 A3SS.MATS.JCEC.txt -rw-rw-r-- 1 cbw cbw 303K 10月 27 12:53 A3SS.MATS.JC.txt -rw-rw-r-- 1 cbw cbw 227K 10月 27 12:53 A5SS.MATS.JCEC.txt -rw-rw-r-- 1 cbw cbw 198K 10月 27 12:53 A5SS.MATS.JC.txt -rw-rw-r-- 1 cbw cbw 488K 10月 27 12:53 fromGTF.A3SS.txt -rw-rw-r-- 1 cbw cbw 407K 10月 27 12:53 fromGTF.A5SS.txt -rw-rw-r-- 1 cbw cbw 188K 10月 27 12:53 fromGTF.MXE.txt -rw-rw-r-- 1 cbw cbw 8.8K 10月 27 12:53 fromGTF.novelJunction.A3SS.txt -rw-rw-r-- 1 cbw cbw 9.1K 10月 27 12:53 fromGTF.novelJunction.A5SS.txt -rw-rw-r-- 1 cbw cbw 73K 10月 27 12:53 fromGTF.novelJunction.MXE.txt -rw-rw-r-- 1 cbw cbw 1.2K 10月 27 12:53 fromGTF.novelJunction.RI.txt -rw-rw-r-- 1 cbw cbw 580K 10月 27 12:53 fromGTF.novelJunction.SE.txt -rw-rw-r-- 1 cbw cbw 102 10月 27 12:53 fromGTF.novelSpliceSite.A3SS.txt -rw-rw-r-- 1 cbw cbw 102 10月 27 12:53 fromGTF.novelSpliceSite.A5SS.txt -rw-rw-r-- 1 cbw cbw 140 10月 27 12:53 fromGTF.novelSpliceSite.MXE.txt -rw-rw-r-- 1 cbw cbw 108 10月 27 12:53 fromGTF.novelSpliceSite.RI.txt -rw-rw-r-- 1 cbw cbw 104 10月 27 12:53 fromGTF.novelSpliceSite.SE.txt -rw-rw-r-- 1 cbw cbw 213K 10月 27 12:53 fromGTF.RI.txt -rw-rw-r-- 1 cbw cbw 1.9M 10月 27 12:53 fromGTF.SE.txt -rw-rw-r-- 1 cbw cbw 69K 10月 27 12:53 JCEC.raw.input.A3SS.txt -rw-rw-r-- 1 cbw cbw 51K 10月 27 12:53 JCEC.raw.input.A5SS.txt -rw-rw-r-- 1 cbw cbw 51K 10月 27 12:53 JCEC.raw.input.MXE.txt -rw-rw-r-- 1 cbw cbw 20K 10月 27 12:53 JCEC.raw.input.RI.txt -rw-rw-r-- 1 cbw cbw 450K 10月 27 12:53 JCEC.raw.input.SE.txt -rw-rw-r-- 1 cbw cbw 67K 10月 27 12:53 JC.raw.input.A3SS.txt -rw-rw-r-- 1 cbw cbw 44K 10月 27 12:53 JC.raw.input.A5SS.txt -rw-rw-r-- 1 cbw cbw 46K 10月 27 12:53 JC.raw.input.MXE.txt -rw-rw-r-- 1 cbw cbw 16K 10月 27 12:53 JC.raw.input.RI.txt -rw-rw-r-- 1 cbw cbw 424K 10月 27 12:53 JC.raw.input.SE.txt -rw-rw-r-- 1 cbw cbw 233K 10月 27 12:53 MXE.MATS.JCEC.txt -rw-rw-r-- 1 cbw cbw 213K 10月 27 12:53 MXE.MATS.JC.txt -rw-rw-r-- 1 cbw cbw 84K 10月 27 12:53 RI.MATS.JCEC.txt -rw-rw-r-- 1 cbw cbw 71K 10月 27 12:53 RI.MATS.JC.txt -rw-rw-r-- 1 cbw cbw 1.9M 10月 27 12:53 SE.MATS.JCEC.txt -rw-rw-r-- 1 cbw cbw 1.8M 10月 27 12:53 SE.MATS.JC.txt -rw-rw-r-- 1 cbw cbw 529 10月 27 12:53 summary.txt drwxrwxr-x 12 cbw cbw 4.0K 10月 27 12:53 tmp 我想从剪接事件中提取FDR小于0.05的显著性剪接事件,已知: rmats.py \ > --b1 /home/cbw/my_result/GSE52415_project/10_rmats_input/GV.txt \ > --b2 /home/cbw/my_result/GSE52415_project/10_rmats_input/4C.txt \ > --gtf /home/cbw/my_result/GSE52415_project/6_bosTau9/genomic.gtf \ > --od /home/cbw/my_result/GSE52415_project/11_rmats_result/GV_vs_4C \ > -t single \ > --variable-read-length \ > --readLength 65 \ > --nthread 16 \ > --tmp /home/cbw/my_result/GSE52415_project/11_rmats_result/GV_vs_4C/tmp gtf: 12.455834150314331 There are 32626 distinct gene ID in the gtf file There are 81403 distinct transcript ID in the gtf file There are 18451 one-transcript genes in the gtf file There are 918752 exons in the gtf file There are 8698 one-exon transcripts in the gtf file There are 6414 one-transcript genes with only one exon in the transcript Average number of transcripts per gene is 2.495035 Average number of exons per transcript is 11.286464 Average number of exons per transcript excluding one-exon tx is 12.517076 Average number of gene per geneGroup is 9.102162 statistic: 0.012009143829345703 read outcome totals across all BAMs USED: 70831585 NOT_PAIRED: 0 NOT_NH_1: 32943870 NOT_EXPECTED_CIGAR: 613870 NOT_EXPECTED_READ_LENGTH: 0 NOT_EXPECTED_STRAND: 0 EXON_NOT_MATCHED_TO_ANNOTATION: 6142530 JUNCTION_NOT_MATCHED_TO_ANNOTATION: 917879 CLIPPED: 7378349 total: 118828083 outcomes by BAM written to: /home/cbw/my_result/GSE52415_project/11_rmats_result/GV_vs_4C/tmp/2025-10-27-12_49_29_020516_read_outcomes_by_bam.txt novel: 80.31163239479065 The splicing graph and candidate read have been saved into /home/cbw/my_result/GSE52415_project/11_rmats_result/GV_vs_4C/tmp/2025-10-27-12_49_29_020516_*.rmats save: 1.478308916091919 loadsg: 0.023231983184814453 ========== Done processing each gene from dictionary to compile AS events Found 19185 exon skipping events Found 1493 exon MX events Found 10399 alt SS events There are 5664 alt 3 SS events and 4735 alt 5 SS events. Found 2458 RI events ========== ase: 0.6016833782196045 count: 2.4356465339660645 Processing count files. Done processing count files. (rmats_env) cbw@dell-PowerEdge-R7525:~$ rmats.py \ > --b1 /home/cbw/my_result/GSE52415_project/10_rmats_input/4C.txt \ > --b2 /home/cbw/my_result/GSE52415_project/10_rmats_input/8C.txt \ > --gtf /home/cbw/my_result/GSE52415_project/6_bosTau9/genomic.gtf \ > --od /home/cbw/my_result/GSE52415_project/11_rmats_result/4C_vs_8C \ > -t single \ > --variable-read-length \ > --readLength 65 \ > --nthread 16 \ > --tmp /home/cbw/my_result/GSE52415_project/11_rmats_result/4C_vs_8C/tmp gtf: 12.070105791091919 There are 32626 distinct gene ID in the gtf file There are 81403 distinct transcript ID in the gtf file There are 18451 one-transcript genes in the gtf file There are 918752 exons in the gtf file There are 8698 one-exon transcripts in the gtf file There are 6414 one-transcript genes with only one exon in the transcript Average number of transcripts per gene is 2.495035 Average number of exons per transcript is 11.286464 Average number of exons per transcript excluding one-exon tx is 12.517076 Average number of gene per geneGroup is 9.102162 statistic: 0.013990640640258789 read outcome totals across all BAMs USED: 85315623 NOT_PAIRED: 0 NOT_NH_1: 41656382 NOT_EXPECTED_CIGAR: 880619 NOT_EXPECTED_READ_LENGTH: 0 NOT_EXPECTED_STRAND: 0 EXON_NOT_MATCHED_TO_ANNOTATION: 8834235 JUNCTION_NOT_MATCHED_TO_ANNOTATION: 927612 CLIPPED: 8705058 total: 146319529 outcomes by BAM written to: /home/cbw/my_result/GSE52415_project/11_rmats_result/4C_vs_8C/tmp/2025-10-27-12_51_21_112895_read_outcomes_by_bam.txt novel: 86.16326379776001 The splicing graph and candidate read have been saved into /home/cbw/my_result/GSE52415_project/11_rmats_result/4C_vs_8C/tmp/2025-10-27-12_51_21_112895_*.rmats save: 1.6635279655456543 loadsg: 0.033537864685058594 ========== Done processing each gene from dictionary to compile AS events Found 21953 exon skipping events Found 1826 exon MX events Found 10423 alt SS events There are 5676 alt 3 SS events and 4747 alt 5 SS events. Found 2456 RI events ========== ase: 0.6707651615142822 count: 2.50030517578125 Processing count files. Done processing count files. (rmats_env) cbw@dell-PowerEdge-R7525:~$ rmats.py \ > --b1 /home/cbw/my_result/GSE52415_project/10_rmats_input/8C.txt \ > --b2 /home/cbw/my_result/GSE52415_project/10_rmats_input/16C.txt \ > --gtf /home/cbw/my_result/GSE52415_project/6_bosTau9/genomic.gtf \ > --od /home/cbw/my_result/GSE52415_project/11_rmats_result/8C_vs_16C \ > -t single \ > --variable-read-length \ > --readLength 65 \ > --nthread 16 \ > --tmp /home/cbw/my_result/GSE52415_project/11_rmats_result/8C_vs_16C/tmp gtf: 11.945042848587036 There are 32626 distinct gene ID in the gtf file There are 81403 distinct transcript ID in the gtf file There are 18451 one-transcript genes in the gtf file There are 918752 exons in the gtf file There are 8698 one-exon transcripts in the gtf file There are 6414 one-transcript genes with only one exon in the transcript Average number of transcripts per gene is 2.495035 Average number of exons per transcript is 11.286464 Average number of exons per transcript excluding one-exon tx is 12.517076 Average number of gene per geneGroup is 9.102162 statistic: 0.012091636657714844 read outcome totals across all BAMs USED: 77286714 NOT_PAIRED: 0 NOT_NH_1: 38484820 NOT_EXPECTED_CIGAR: 922886 NOT_EXPECTED_READ_LENGTH: 0 NOT_EXPECTED_STRAND: 0 EXON_NOT_MATCHED_TO_ANNOTATION: 8523239 JUNCTION_NOT_MATCHED_TO_ANNOTATION: 706280 CLIPPED: 7447971 total: 133371910 outcomes by BAM written to: /home/cbw/my_result/GSE52415_project/11_rmats_result/8C_vs_16C/tmp/2025-10-27-12_53_24_111018_read_outcomes_by_bam.txt novel: 84.98817467689514 The splicing graph and candidate read have been saved into /home/cbw/my_result/GSE52415_project/11_rmats_result/8C_vs_16C/tmp/2025-10-27-12_53_24_111018_*.rmats save: 1.671297550201416 loadsg: 0.03409314155578613 ========== Done processing each gene from dictionary to compile AS events Found 23041 exon skipping events Found 2057 exon MX events Found 10414 alt SS events There are 5673 alt 3 SS events and 4741 alt 5 SS events. Found 2452 RI events ========== ase: 0.673703670501709 count: 2.3988852500915527 Processing count files. Done processing count files. (rmats_env) cbw@dell-PowerEdge-R7525:~$ rmats.py \ > --b1 /home/cbw/my_result/GSE52415_project/10_rmats_input/16C.txt \ > --b2 /home/cbw/my_result/GSE52415_project/10_rmats_input/Blastocyst.txt \ > --gtf /home/cbw/my_result/GSE52415_project/6_bosTau9/genomic.gtf \ > --od /home/cbw/my_result/GSE52415_project/11_rmats_result/16C_vs_Blastocyst \ > -t single \ > --variable-read-length \ > --readLength 65 \ > --nthread 16 \ > --tmp /home/cbw/my_result/GSE52415_project/11_rmats_result/16C_vs_Blastocyst/tmp gtf: 11.914160251617432 There are 32626 distinct gene ID in the gtf file There are 81403 distinct transcript ID in the gtf file There are 18451 one-transcript genes in the gtf file There are 918752 exons in the gtf file There are 8698 one-exon transcripts in the gtf file There are 6414 one-transcript genes with only one exon in the transcript Average number of transcripts per gene is 2.495035 Average number of exons per transcript is 11.286464 Average number of exons per transcript excluding one-exon tx is 12.517076 Average number of gene per geneGroup is 9.102162 statistic: 0.014154911041259766 read outcome totals across all BAMs USED: 116519162 NOT_PAIRED: 0 NOT_NH_1: 65459731 NOT_EXPECTED_CIGAR: 1476376 NOT_EXPECTED_READ_LENGTH: 0 NOT_EXPECTED_STRAND: 0 EXON_NOT_MATCHED_TO_ANNOTATION: 7360222 JUNCTION_NOT_MATCHED_TO_ANNOTATION: 1076921 CLIPPED: 10870273 total: 202762685 outcomes by BAM written to: /home/cbw/my_result/GSE52415_project/11_rmats_result/16C_vs_Blastocyst/tmp/2025-10-27-12_56_46_019653_read_outcomes_by_bam.txt novel: 196.07467126846313 The splicing graph and candidate read have been saved into /home/cbw/my_result/GSE52415_project/11_rmats_result/16C_vs_Blastocyst/tmp/2025-10-27-12_56_46_019653_*.rmats save: 2.1658835411071777 loadsg: 0.0307466983795166 ========== Done processing each gene from dictionary to compile AS events Found 22384 exon skipping events Found 1907 exon MX events Found 10396 alt SS events There are 5668 alt 3 SS events and 4728 alt 5 SS events. Found 2451 RI events ========== ase: 0.7255954742431641 count: 2.9417178630828857 Processing count files. Done processing count files. 提取GV4C,4C8C,8C16C,16C囊胚的SE,MXE,IR,A5SS,A3SS的显著差异事件 (FDR < 0.05) 代码要求一个组一个组的提取 输出文件夹绝对路径:/home/cbw/my_result/GSE52415_project/12_rmats_result_significant 已知: head -1 /home/cbw/my_result/GSE52415_project/11_rmats_result/GV_vs_4C/SE.MATS.JCEC.txt | tr '\t' '\n' | cat -n 1 ID 2 GeneID 3 geneSymbol 4 chr 5 strand 6 exonStart_0base 7 exonEnd 8 upstreamES 9 upstreamEE 10 downstreamES 11 downstreamEE 12 ID 13 IJC_SAMPLE_1 14 SJC_SAMPLE_1 15 IJC_SAMPLE_2 16 SJC_SAMPLE_2 17 IncFormLen 18 SkipFormLen 19 PValue 20 FDR 21 IncLevel1 22 IncLevel2 23 IncLevelDifference (rmats_env) cbw@dell-PowerEdge-R7525:~$ echo "=== MXE文件列结构 ===" === MXE文件列结构 === t/GSE52415_project/11_rmats_result/GV_vs_4C/MXE.MA(rmats_env) cbw@dell-PowerEdge-R7525:~$ head -1 /home/cbw/my_result/GSE52415_project/11_rmats_result/GV_vs_4C/MXE.MATS.JCEC.txt | tr '\t' '\n' | cat -n 1 ID 2 GeneID 3 geneSymbol 4 chr 5 strand 6 1stExonStart_0base 7 1stExonEnd 8 2ndExonStart_0base 9 2ndExonEnd 10 upstreamES 11 upstreamEE 12 downstreamES 13 downstreamEE 14 ID 15 IJC_SAMPLE_1 16 SJC_SAMPLE_1 17 IJC_SAMPLE_2 18 SJC_SAMPLE_2 19 IncFormLen 20 SkipFormLen 21 PValue 22 FDR 23 IncLevel1 24 IncLevel2 25 IncLevelDifference (rmats_env) cbw@dell-PowerEdge-R7525:~$ echo "=== RI文件列结构 ===" === RI文件列结构 === /GSE52415_project/11_rmats_result/GV_vs_4C/RI.MATS(rmats_env) cbw@dell-PowerEdge-R7525:~$ head -1 /home/cbw/my_result/GSE52415_project/11_rmats_result/GV_vs_4C/RI.MATS.JCEC.txt | tr '\t' '\n' | cat -n 1 ID 2 GeneID 3 geneSymbol 4 chr 5 strand 6 riExonStart_0base 7 riExonEnd 8 upstreamES 9 upstreamEE 10 downstreamES 11 downstreamEE 12 ID 13 IJC_SAMPLE_1 14 SJC_SAMPLE_1 15 IJC_SAMPLE_2 16 SJC_SAMPLE_2 17 IncFormLen 18 SkipFormLen 19 PValue 20 FDR 21 IncLevel1 22 IncLevel2 23 IncLevelDifference (rmats_env) cbw@dell-PowerEdge-R7525:~$ echo "=== A5SS文件列结构 ===" lt/GSE52415_project/11_rmat=== A5SS文件列结构 === s_result/GV_vs_4C/A5SS.(rmats_env) cbw@dell-PowerEdge-R7525:~$ head -1 /home/cbw/my_result/GSE52415_project/11_rmats_result/GV_vs_4C/A5SS.MATS.JCEC.txt | tr '\t' '\n' | cat -n 1 ID 2 GeneID 3 geneSymbol 4 chr 5 strand 6 longExonStart_0base 7 longExonEnd 8 shortES 9 shortEE 10 flankingES 11 flankingEE 12 ID 13 IJC_SAMPLE_1 14 SJC_SAMPLE_1 15 IJC_SAMPLE_2 16 SJC_SAMPLE_2 17 IncFormLen 18 SkipFormLen 19 PValue 20 FDR 21 IncLevel1 22 IncLevel2 23 IncLevelDifference (rmats_env) cbw@dell-PowerEdge-R7525:~$ (rmats_env) cbw@dell-PowerEdge-R7525:~$ echo "=== A3SS文件列结构 ===" lt/GSE52415_project/11_rmats_result/GV_vs_4C/A3SS.=== A3SS文件列结构 === (rmats_env) cbw@dell-PowerEdge-R7525:~$ head -1 /home/cbw/my_result/GSE52415_project/11_rmats_result/GV_vs_4C/A3SS.MATS.JCEC.txt | tr '\t' '\n' | cat -n 1 ID 2 GeneID 3 geneSymbol 4 chr 5 strand 6 longExonStart_0base 7 longExonEnd 8 shortES 9 shortEE 10 flankingES 11 flankingEE 12 ID 13 IJC_SAMPLE_1 14 SJC_SAMPLE_1 15 IJC_SAMPLE_2 16 SJC_SAMPLE_2 17 IncFormLen 18 SkipFormLen 19 PValue 20 FDR 21 IncLevel1 22 IncLevel2 23 IncLevelDifference
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