tmjdone的专栏

### plotNuc.pl --- #! /usr/bin/perl -w## File: plotNuc.pl# Time-stamp: # $Id: $## Copyright (C) 2010 by tmjdone## Author: tmjdone## Description:# use strict;use Data::Dumper;use Getopt::Long;use Pod::Usage;use Bio::SeqIO;

原文：http://dasai.dili360.com/hyxs/news.php?news_id=13植物拉丁学名的书写（基础部分）     植物的“学名”，是指以拉丁文书写的国际通用名称，其余各种名称，都是俗名、地方名或者土名，无论是以英文、俄文、中文、日文或其他形式出现。例如牵牛花，有些人可能认为“喇叭花”是俗名，而“牵牛花”是学名，其实，无论是牵牛花、喇

ssh: putty filezillaeditor: emacsemacs:   quit: ctrl + x, ctrl + c save: ctrl+x, ctrl+sselect all: ctrl+x, ctrl+hdelete region: ctrl+x, r, dlinux:pwd, cd, mkdir, rmdir, rm, ls, tree

old:     perl -d:DProf test.pldprofppdprofpp -Tnew:tools: http://search.cpan.org/dist/Devel-NYTProf/cpan -i Devel::NYTProfperl -dNYTProf xxx.plnytprofhtml

visit        https://wci.llnl.gov/codes/visit/executables.html

#$ -S /bin/sh#$ -e JobName.err.$JOB_ID#$ -o JobName.out.$JOB_ID#$ -l vf=1G#$ -l hostname=node3#$ -m beas#$ -M xxx@xxx.xxx#$ -cwduname -n

source: http://www.r-bloggers.com/estimate-decay-of-linkage-disequilibrium-with-distance/It is well known that linkage disequilibrium (LD) decays with distance. Several functions have been

http://www.elated.com/articles/drag-and-drop-with-jquery-your-essential-guide/

1. install torque-server, torque-mom, and torque-scheduler2. see /usr/share/doc/torque-X.X.X/README & run torque.setup3. service pbs_server startif something wrong with hostname etc, change

aoeu#include #include #include #include #include #include #include using namespace std;using namespace boost::iostreams;int main(int argc,char* argv[]){ for(int i=1;i<argc;i++){ pri

x=c(0,1,2,3,4)y=c(1,2,3,4,5)r=nls(y ~ 1/(1+4*x*p),start=list(p=0))summary(r)xt=seq(1,1000,0.1)yt=1/(1+4*xt*0.02860)postscript(file="/path/to/directory/test.ps",width=7,height=7)or svg(file="/

source: http://wenda.tianya.cn/wenda/thread?tid=0ac2a18936c98472quick reference:http://www.cleibsonalmeida.blog.br/website/downloads/resumo_postgresql.pdfFedora下PostgreSQL的安装和使用指南l

How to install bioperl via cpan:https://wiki.archlinux.org/index.php/Bioperlbash>cpancpan>d /bioperl/cpan>install xxx/bioperl-xxx.tar.gzHow to install GBrowse:http://gmod.org/wiki/GBrows

BLASTuse Bio::SearchIO;my $searchio=Bio::SearchIO->new(-file=>$file_blast,-format=>'blast');while( my $result = $searchio->next_result ) { my $qid = $result->query_name(); my $qlen= $result-

网页：axure

download: http://dmtcp.sourceforge.net/tar zxf xxxx./configure --prefix=xxxmake make installedit .bashrc: add two lines:export PATH=xxx/bin:$PATHexport JALIB_UTILITY_DIR=xxx/bin

Title:Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin Abbreviation:hemoglobin (Hb) thin-layer isoelectric focusing (TL-

source:http://www.eyeondna.com/2007/09/14/what-comes-after-genome-sequencing/What comes after genome sequencing?by Dr. Hsien-Hsien LeiPosted

这篇文章为被噪声污染的无标签数据提供了一个在线无监督学习机制。Hierarchical clustering 可以提供满意的结果但是需要大量的计算的大量的内存。SOM(Self-Organizing Map)产生一个从高维空间到低维空间的映射。。。。对于非

1. install taverna server following official install guide2. download emboss and install3. download soaplab2:cd unzippd dir;cp ./src

circular:http://circos.ca/

1. 从http://www.blast2go.com/b2glaunch/resources  下载相应资源(http://www.blast2go.com/data/blast2go/b2g4pipe_v2.5.ziphttp://www.blast2go.com/data/blast2go/local_b2g_db_tutorial_0809.zip)1.5 (可选,依据

source: ftp://ftp.ebi.ac.uk/pub/databases/interpro/iprscan/Installing_InterProScan.txtDownload the following files from ftp://ftp.ebi.ac.uk/pub/databases/interpro/iprscan : * RELEASE/latest/

1.  Positive selection for increased dosage has been suggested to explain large tandem arrays of rRNA and histone genes (Hurles2004 ) and is observed experimentallyin bacteria to cope with nutrient

identifing enriched Gene Ontology terms :Ontologizer (Nucleic Acids Research, 2010): http://sourceforge.net/projects/ontologizer/

R --slave --vanilla -e 'a=fisher.test(matrix(c(803,33811,524,50936),nr=2),alternative="two.sided")$p.value;b=p.adjust(a,method="bonferroni",3660);a;b;'

paralogon: duplicated genomic region autopolyploidization:  WGD due to doubling of a single genome allopolyploidization: WGD caused by merging two divergent parental genomesneofunctionalization:

4DTV stands for four-fold synonymous (degenerative) third-codon transversion. It represents a transversion in the third nucleotide position within four codons that does not result in a change in cor

http://bioinfolab.unl.edu/emlab/mac.htmlMac OS X Hints & Tips MacOS X Bioinformatics & Molecular Evolution tools MacOS X softwareClustalX2

autoconf error: possibly undefined macro: AM_CONFIG_HEADERrun following command:aclocal ; autoheader; automake ; autoconf