Software for feature selection

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本文汇总了各类特征选择软件，包括通用目的、微阵列分析、质谱分析及单核苷酸多态性分析领域的软件。提供了如WEKA、SAM、GA-KNN等工具的介绍及其网址链接。

Table 4. Software for feature selection

General purpose FS software
WEKA	Java	Witten and Frank (2005)	`http://www.cs.waikato.ac.nz/ml/weka`
Fast Correlation Based Filter	Java	Yu and Liu (2004)	`http://www.public.asu.edu/~huanliu/FCBF/FCBFsoftware.html`
Feature Selection Book	Ansi C	Liu and Motoda (1998)	`http://www.public.asu.edu/~huanliu/Fsbook`
MLC++	C++	Kohavi et al. (1996)	`http://www.sgi.com/tech/mlc`
Spider	Matlab	–	`http://www.kyb.tuebingen.mpg.de/bs/people/spider`
SVM and Kernel Methods	Matlab	Canu et al. (2003)	`http://asi.insa-rouen.fr/~arakotom/toolbox/index`
Matlab Toolbox
Microarray analysis FS software
SAM	R, Excel	Tusher et al. (2001)	`http://www-stat.stanford.edu/~tibs/SAM/`
GALGO	R	Trevino and Falciani (2006)	`http://www.bip.bham.ac.uk/bioinf/galgo.html`
PCP	C, C++	Buturovic (2005)	`http://pcp.sourceforge.net`
GA-KNN	C	Li et al. (2001)	`http://dir.niehs.nih.gov/microarray/datamining/`
Rankgene	C	Su et al. (2003)	`http://genomics10.bu.edu/yangsu/rankgene/`
EDGE	R	Leek et al. (2006)	`http://www.biostat.washington.edu/software/jstorey/edge/`
GEPAS-Prophet	Perl, C	Medina et al. (2007)	`http://prophet.bioinfo.cipf.es/`
DEDS (Bioconductor)	R	Yang et al. (2005)	`http://www.bioconductor.org/`
RankProd (Bioconductor)	R	Breitling et al. (2004)	`http://www.bioconductor.org/`
Limma (Bioconductor)	R	Smyth (2004)	`http://www.bioconductor.org/`
Multtest (Bioconductor)	R	Dudoit et al. (2003)	`http://www.bioconductor.org/`
Nudge (Bioconductor)	R	Dean and Raftery (2005)	`http://www.bioconductor.org/`
Qvalue (Bioconductor)	R	Storey (2002)	`http://www.bioconductor.org/`
twilight (Bioconductor)	R	Scheid and Spang (2005)	`http://www.bioconductor.org/`
ComparativeMarkerSelection	JAVA, R	Gould et al. (2006)	`http://www.broad.mit.edu/genepattern`
(GenePattern)
Mass spectra analysis FS software
GA-KNN	C	Li et al. (2004)	`http://dir.niehs.nih.gov/microarray/datamining/`
R-SVM	R, C, C++	Zhang et al. (2006)	`http://www.hsph.harvard.edu/bioinfocore/RSVMhome/ R-SVM.html`
SNP analysis FS software
CHOISS	C++, Perl	Lee and Kang (2004)	`http://biochem.kaist.ac.kr/choiss.htm`
MLR-tagging	C	He and Zelikovsky (2006)	`http://alla.cs.gsu.ed/~software/tagging/tagging.html`
WCLUSTAG	JAVA	Sham et al. (2007)	`http://bioinfo.hku.hk/wclustag`