安装pasa

最新推荐文章于 2025-08-30 23:15:17 发布

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最新推荐文章于 2025-08-30 23:15:17 发布 · 1k 阅读

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#1.安装依赖软件

# installing GMAP
#wget http://research-pub.gene.com/gmap/src/gmap-gsnap-2017-11-15.tar.gz -P ~/software/
tar zxf /opt/software/gmap-gsnap-2017-11-15.tar.gz 
cd gmap-2017-11-15
./configure --prefix=/opt/biosoft/gmap-2017-11-15/ && make -j 4 && make install
cd .. && rm -rf gmap-2017-11-15/
echo 'PATH=$PATH:/opt/biosoft/gmap-2017-11-15/bin/' >> ~/.bashrc.14
source ~/.bashrc.14

# installing blat 
#wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/blat/blat -P ~/software/
mkdir /opt/biosoft/blat
cp /opt/software/blat /opt/biosoft/blat
chmod 755 /opt/biosoft/blat/blat
echo 'PATH=$PATH:/opt/biosoft/blat/' >> ~/.bashrc.14
source ~/.bashrc.14

# installing FASTA ()
#wget http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-36.3.8g.tar.gz -P ~/software/
tar zxf /opt/software/fasta-36.3.8g.tar.gz -C /opt/biosoft/
cd /opt/biosoft/fasta-36.3.8g/src/
make -f ../make/Makefile.linux_sse2 all
ln -s /opt/biosoft/fasta-36.3.