<?xml version="1.0" encoding="utf-8" ?><rss version="2.0"><channel><title><![CDATA[fanyucai1]]></title><description><![CDATA[]]></description><link>https://blog.youkuaiyun.com/fanyucai1</link><language>zh-cn</language><generator>https://blog.youkuaiyun.com/</generator><copyright><![CDATA[Copyright &copy; fanyucai1]]></copyright><item><title><![CDATA[cc1: fatal error: inaccessible plugin file plugin/annobin.so expanded from short plugin name annobin]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/148895520</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/148895520</guid><author>fanyucai1</author><pubDate>Wed, 25 Jun 2025 11:40:48 +0800</pubDate><description><![CDATA[我的系统是centos8系统默认gcc (GCC) 8.5.0 20210514。]]></description><category></category></item><item><title><![CDATA[NCBI数据库本地化]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/148234339</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/148234339</guid><author>fanyucai1</author><pubDate>Mon, 26 May 2025 17:05:44 +0800</pubDate><description><![CDATA[Step3:查看可下载的数据库。Step1:下载blast+step4:下载对应的数据库。Step2:安装依赖。]]></description><category></category></item><item><title><![CDATA[NCBI上直接下载序列]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/128011756</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/128011756</guid><author>fanyucai1</author><pubDate>Thu, 24 Nov 2022 09:36:04 +0800</pubDate><description><![CDATA[下载客户端
Download a gene, genome or virus dataset as a zip file
https://www.ncbi.nlm.nih.gov/datasets/docs/v2/download-and-install/]]></description><category></category></item><item><title><![CDATA[我看LPL----S12遗憾]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127635869</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127635869</guid><author>fanyucai1</author><pubDate>Tue, 01 Nov 2022 16:31:26 +0800</pubDate><description><![CDATA[LPL这个怪圈有的队伍一赛季不赢一场，我觉得奇怪，是什么样的人只要有钱组队就可以上LPL么，队伍差异化太大了，有钱了就是堆人，和中国足球一样，之前唯一牛逼的是恒大，现在也完蛋了，以前俱乐部踢球牛逼，一到世界赛，国家赛道就拉胯，毫无斗志，不积极，全场散步，每个人就和打工人一样，除了自己的一亩三分地，一点积极抢动的意思都没有，无荣誉感，无羞耻感。我不打游戏，只看视频，😂。这几次世界赛，无论是S11还是RNG夺得春季赛冠军，每次都看得让人很揪心，完全不存在LPL实力碾压LCK。]]></description><category></category></item><item><title><![CDATA[生物医学关键词及基础知识学习笔记]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127349369</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127349369</guid><author>fanyucai1</author><pubDate>Sun, 16 Oct 2022 16:27:24 +0800</pubDate><description><![CDATA[Local Run Manager，可实现直观的机载数据分析(https://www.illumina.com.cn/products/by-type/informatics-products/local-run-manager.html).大部分Local Run Manager分析模块会提示您为特定运行选择文库制备试剂盒。核型定位(Karyomapping)利用父母和参照者(患有此病的家族近亲)的单核苷酸多态性(SNP)基因分 型数据来建立胚胎中染色体片段的亲本来源的全面图谱。荧光原位杂交(FISH)]]></description><category></category></item><item><title><![CDATA[Mac-XQuartz-linux]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127349346</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127349346</guid><author>fanyucai1</author><pubDate>Sun, 16 Oct 2022 16:26:23 +0800</pubDate><description><![CDATA[ssh -X user@192.168.0.200　//-X参数表示转发X11数据， 把用户名称user 以及服务器S的ip地址替换为你自己的。5:如果遇到说没有找到.Xauthority文件，重启ssh客户端就好了。4:参考修改 ~/.ssh/config 文件，添加如下条目。下载最新版本的 XQuartZ软件。配置修改好后，再次连接即可使用。]]></description><category></category></item><item><title><![CDATA[NIPT-plus]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127349296</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127349296</guid><author>fanyucai1</author><pubDate>Sun, 16 Oct 2022 16:24:18 +0800</pubDate><description><![CDATA[由22q11 deletion (DiGeorge)结构变异的范围小于3M，因此测序深度要求20M左右。该文献说明针对所有染色体的异常产前筛查测序深度10M reads就可以满足了。该文献说明针对性染色体的异常产前筛查测序深度10M reads就可以满足了。]]></description><category></category></item><item><title><![CDATA[CentOS系统下-docker安装]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127349279</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127349279</guid><author>fanyucai1</author><pubDate>Sun, 16 Oct 2022 16:23:24 +0800</pubDate><description><![CDATA[3：安装最新版本的docker。6:安装完成后建立用户组。4:启动docker。]]></description><category></category></item><item><title><![CDATA[人类参考基因组详解]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127349266</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127349266</guid><author>fanyucai1</author><pubDate>Sun, 16 Oct 2022 16:22:21 +0800</pubDate><description><![CDATA[primary assembly版本是一致的，简单区别就是 the use of chr1(in hg19) versus 1 (in b37) to indicate chromosome 1,and chrM vs.MT for the mitochondrial genome. 但是对于Patches有区别，其中包含的decoys不同。包括来自 GRCh37、rCRS 线粒体序列、人疱疹病毒 4 型 1 类和级联诱饵序列的数据。数据位于 EBI FTP 网站托管的文件 hs37d5.fa.gz 中。]]></description><category></category></item><item><title><![CDATA[VCF学习笔记]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127349250</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127349250</guid><author>fanyucai1</author><pubDate>Sun, 16 Oct 2022 16:21:17 +0800</pubDate><description><![CDATA[means that the genotypes have been phased杂合的两个等位基因知道哪个等位基因来自哪条染色体；如果是单个样本感觉是可以通过碱基的测序深度获得（Physical Phasing）小局部连成一个整体，接出完整的单倍体，或者是通过测序reads，另外可以如果是trio的化可以通过家族亲缘关系进行推断。代表这个位置存在变异也可能不存在变异就是不确定，因此在数据分析的时候一般会去掉。]]></description><category></category></item><item><title><![CDATA[新冠病毒做进化树covidseq]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127349225</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127349225</guid><author>fanyucai1</author><pubDate>Sun, 16 Oct 2022 16:19:36 +0800</pubDate><description><![CDATA[参考链接：https://samtools.github.io/bcftools/howtos/consensus-sequence.html。构建进化树：pplacer/iqtree/FastTree/RAxML/Gubbins。1:将下机数据与参考基因组进行比对和变异检测。2:生成全基因组水平的一致性序列。进化树可视化：Figtree。3:构建基因组水平的进化树。变异检测：Snippy。]]></description><category></category></item><item><title><![CDATA[microbiome__clinical__analysis临床微生物分析]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127349195</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127349195</guid><author>fanyucai1</author><pubDate>Sun, 16 Oct 2022 16:18:15 +0800</pubDate><description><![CDATA[8.手动整理的病原微生物数据库:FDA­-ARGOS（https://www.ncbi.nlm.nih.gov/bioproject/231221）6.PRINSEQ去除测序数据中的重复片段:http://prinseq.sourceforge.net/7.seqtk随机抽取1M的reads:https://github.com/lh3/seqtk。3.Unique clade-specific marker genes进化标签基因。2.NCBI nucleotide database基因数据库。]]></description><category></category></item><item><title><![CDATA[建立hg19版本的gtf]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127349167</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127349167</guid><author>fanyucai1</author><pubDate>Sun, 16 Oct 2022 16:16:17 +0800</pubDate><description><![CDATA[2:下载genePredToGtf:http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/genePredToGtf。参考链接：http://genomewiki.ucsc.edu/index.php/Genes_in_gtf_or_gff_format。]]></description><category></category></item><item><title><![CDATA[关于CNV的注释评估]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/127349115</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/127349115</guid><author>fanyucai1</author><pubDate>Sun, 16 Oct 2022 16:13:48 +0800</pubDate><description><![CDATA[（关注pathogenic/ probably pathogenic去掉 “likely benign,” and “benign"保留VUS, variant of unknown significance）OMIM (Online Mendelian Inheritance in Man）以及ACMG list 56 medically actionable genes。拷贝数变异常用的软件：CoNIFER。]]></description><category></category></item><item><title><![CDATA[mysql学习笔记]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/126950712</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/126950712</guid><author>fanyucai1</author><pubDate>Tue, 20 Sep 2022 12:19:11 +0800</pubDate><description><![CDATA[mysql]]></description><category></category></item><item><title><![CDATA[Web网站介绍]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/126950703</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/126950703</guid><author>fanyucai1</author><pubDate>Tue, 20 Sep 2022 12:16:07 +0800</pubDate><description><![CDATA[web开发介绍]]></description><category></category></item><item><title><![CDATA[Html学习笔记]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/126950688</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/126950688</guid><author>fanyucai1</author><pubDate>Tue, 20 Sep 2022 12:15:06 +0800</pubDate><description><![CDATA[html]]></description><category></category></item><item><title><![CDATA[django学习笔记（一）]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/126949798</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/126949798</guid><author>fanyucai1</author><pubDate>Tue, 20 Sep 2022 11:54:48 +0800</pubDate><description><![CDATA[Django]]></description><category></category></item><item><title><![CDATA[Linux学习笔记（持续更新）]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/121290204</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/121290204</guid><author>fanyucai1</author><pubDate>Fri, 12 Nov 2021 16:10:14 +0800</pubDate><description><![CDATA[1.设置~/.vimrc
set number
syntax on
set cursorline
set tabstop=4


]]></description><category></category></item><item><title><![CDATA[HRD学习笔记]]></title><link>https://blog.youkuaiyun.com/fanyucai1/article/details/119741040</link><guid>https://blog.youkuaiyun.com/fanyucai1/article/details/119741040</guid><author>fanyucai1</author><pubDate>Mon, 16 Aug 2021 20:09:56 +0800</pubDate><description><![CDATA[HRD检测方法
HRD主要病因有3种：①突变(包括胚系BRCA基因、胚系HR基因和体细胞HR基因)，②结构重排(LOH，杂合性丢失;TAI，端粒等位基因失平衡；LST，大片段迁移)，③表观遗传修饰(启动子甲基化)。
1:Loss of Heterozygosity杂合性缺失：1）长于15Mb，2）短于整个染色体LOH区域数量
Abkevich V, Timms K M, Hennessy B T, et al. Patterns of genomic loss of heterozygosity predi]]></description><category></category></item></channel></rss>