(3) MPI-IO: MPI_File_read_at_all MPI_File_read_at_all



#include<stdio.h>
#include<stdlib.h>
#include<string.h>
#include"mpi.h"

/**
 * all process read/write at the same offset
 * int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status * status)
 * int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status * status)
 */

int main(int argc, char *argv[])
{
	int totalTaskNum, rankID;

	MPI_Init(&argc, &argv);
	MPI_Comm_rank(MPI_COMM_WORLD, &rankID);
	MPI_Comm_size(MPI_COMM_WORLD, &totalTaskNum);

	char *filename = "file.txt";
	MPI_File fh;
	MPI_Status status;
	MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_CREATE | MPI_MODE_RDWR, MPI_INFO_NULL, &fh);

	MPI_Offset offset = 0;
	char buf[100];
	strcpy(buf, "hello, world!");
	//strlen(buf) = 13 while sizeof(buf) = 100
	MPI_File_write_at_all(fh, offset, buf, strlen(buf), MPI_CHAR, &status);

	MPI_File_read_at_all(fh, offset, buf, sizeof(buf), MPI_CHAR, &status);
	printf("rankID = %d, buf = %s\n", rankID, buf);

	MPI_File_close(&fh);//after open, fh has the communicator info

	MPI_Finalize();
	return 0;
}


(dla) root@bbbc6f9276e3:/# pip install mpi4py==3.0.3 Collecting mpi4py==3.0.3 Downloading mpi4py-3.0.3.tar.gz (1.4 MB) |################################| 1.4 MB 294 kB/s Preparing metadata (setup.py) ... done Building wheels for collected packages: mpi4py Building wheel for mpi4py (setup.py) ... error ERROR: Command errored out with exit status 1: command: /root/miniconda3/envs/dla/bin/python3.6 -u -c &#39;import io, os, sys, setuptools, tokenize; sys.argv[0] = &#39;"&#39;"&#39;/tmp/pip-install-lw95xiq4/mpi4py_8b91087d72f84b52b99093b4f331a6c6/setup.py&#39;"&#39;"&#39;; __file__=&#39;"&#39;"&#39;/tmp/pip-install-lw95xiq4/mpi4py_8b91087d72f84b52b99093b4f331a6c6/setup.py&#39;"&#39;"&#39;;f = getattr(tokenize, &#39;"&#39;"&#39;open&#39;"&#39;"&#39;, open)(__file__) if os.path.exists(__file__) else io.StringIO(&#39;"&#39;"&#39;from setuptools import setup; setup()&#39;"&#39;"&#39;);code = f.read().replace(&#39;"&#39;"&#39;\r\n&#39;"&#39;"&#39;, &#39;"&#39;"&#39;\n&#39;"&#39;"&#39;);f.close();exec(compile(code, __file__, &#39;"&#39;"&#39;exec&#39;"&#39;"&#39;))&#39; bdist_wheel -d /tmp/pip-wheel-1b28h61h cwd: /tmp/pip-install-lw95xiq4/mpi4py_8b91087d72f84b52b99093b4f331a6c6/ Complete output (206 lines): running bdist_wheel running build running build_src running build_py creating build creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.6/mpi4py creating build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.6/mpi4py creating build/lib.linux-x86_64-3.6/mpi4py/include creating build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py running build_clib MPI configuration: [mpi] from &#39;mpi.cfg&#39; MPI C compiler: /root/miniconda3/envs/dla/bin/mpicc MPI C++ compiler: /root/miniconda3/envs/dla/bin/mpicxx MPI F compiler: /root/miniconda3/envs/dla/bin/mpifort MPI F90 compiler: /root/miniconda3/envs/dla/bin/mpif90 MPI F77 compiler: /root/miniconda3/envs/dla/bin/mpif77 checking for library &#39;lmpe&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o building &#39;mpe&#39; dylib library creating build/temp.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/src creating build/temp.linux-x86_64-3.6/src/lib-pmpi /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.6/src/lib-pmpi/mpe.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- warning: build_clib: command &#39;/root/miniconda3/envs/dla/bin/mpicc&#39; failed with exit status 1 warning: build_clib: building optional library "mpe" failed checking for library &#39;vt-mpi&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o checking for library &#39;vt.mpi&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o building &#39;vt&#39; dylib library /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.6/src/lib-pmpi/vt.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- warning: build_clib: command &#39;/root/miniconda3/envs/dla/bin/mpicc&#39; failed with exit status 1 warning: build_clib: building optional library "vt" failed checking for library &#39;vt-mpi&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o checking for library &#39;vt.mpi&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o building &#39;vt-mpi&#39; dylib library /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.6/src/lib-pmpi/vt-mpi.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- warning: build_clib: command &#39;/root/miniconda3/envs/dla/bin/mpicc&#39; failed with exit status 1 warning: build_clib: building optional library "vt-mpi" failed checking for library &#39;vt-hyb&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o checking for library &#39;vt.ompi&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o building &#39;vt-hyb&#39; dylib library /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.6/src/lib-pmpi/vt-hyb.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- warning: build_clib: command &#39;/root/miniconda3/envs/dla/bin/mpicc&#39; failed with exit status 1 warning: build_clib: building optional library "vt-hyb" failed running build_ext MPI configuration: [mpi] from &#39;mpi.cfg&#39; MPI C compiler: /root/miniconda3/envs/dla/bin/mpicc MPI C++ compiler: /root/miniconda3/envs/dla/bin/mpicxx MPI F compiler: /root/miniconda3/envs/dla/bin/mpifort MPI F90 compiler: /root/miniconda3/envs/dla/bin/mpif90 MPI F77 compiler: /root/miniconda3/envs/dla/bin/mpif77 checking for dlopen() availability ... checking for header &#39;dlfcn.h&#39; ... gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/root/miniconda3/envs/dla/include/python3.6m -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for library &#39;dl&#39; ... gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/root/miniconda3/envs/dla/include/python3.6m -c _configtest.c -o _configtest.o gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.6 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function &#39;dlopen&#39; ... gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/root/miniconda3/envs/dla/include/python3.6m -c _configtest.c -o _configtest.o gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.6 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest building &#39;mpi4py.dl&#39; extension gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/root/miniconda3/envs/dla/include/python3.6m -c src/dynload.c -o build/temp.linux-x86_64-3.6/src/dynload.o gcc -pthread -shared -B /root/miniconda3/envs/dla/compiler_compat -L/root/miniconda3/envs/dla/lib -Wl,-rpath=/root/miniconda3/envs/dla/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/src/dynload.o -Lbuild/temp.linux-x86_64-3.6 -ldl -o build/lib.linux-x86_64-3.6/mpi4py/dl.cpython-36m-x86_64-linux-gnu.so checking for MPI compile and link ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/root/miniconda3/envs/dla/include/python3.6m -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o error: Cannot compile MPI programs. Check your configuration!!! ---------------------------------------- ERROR: Failed building wheel for mpi4py Running setup.py clean for mpi4py Failed to build mpi4py Installing collected packages: mpi4py Running setup.py install for mpi4py ... error ERROR: Command errored out with exit status 1: command: /root/miniconda3/envs/dla/bin/python3.6 -u -c &#39;import io, os, sys, setuptools, tokenize; sys.argv[0] = &#39;"&#39;"&#39;/tmp/pip-install-lw95xiq4/mpi4py_8b91087d72f84b52b99093b4f331a6c6/setup.py&#39;"&#39;"&#39;; __file__=&#39;"&#39;"&#39;/tmp/pip-install-lw95xiq4/mpi4py_8b91087d72f84b52b99093b4f331a6c6/setup.py&#39;"&#39;"&#39;;f = getattr(tokenize, &#39;"&#39;"&#39;open&#39;"&#39;"&#39;, open)(__file__) if os.path.exists(__file__) else io.StringIO(&#39;"&#39;"&#39;from setuptools import setup; setup()&#39;"&#39;"&#39;);code = f.read().replace(&#39;"&#39;"&#39;\r\n&#39;"&#39;"&#39;, &#39;"&#39;"&#39;\n&#39;"&#39;"&#39;);f.close();exec(compile(code, __file__, &#39;"&#39;"&#39;exec&#39;"&#39;"&#39;))&#39; install --record /tmp/pip-record-tvroj_hd/install-record.txt --single-version-externally-managed --compile --install-headers /root/miniconda3/envs/dla/include/python3.6m/mpi4py cwd: /tmp/pip-install-lw95xiq4/mpi4py_8b91087d72f84b52b99093b4f331a6c6/ Complete output (206 lines): running install running build running build_src running build_py creating build creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.6/mpi4py creating build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.6/mpi4py/futures copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.6/mpi4py copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.6/mpi4py creating build/lib.linux-x86_64-3.6/mpi4py/include creating build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.6/mpi4py/include/mpi4py running build_clib MPI configuration: [mpi] from &#39;mpi.cfg&#39; MPI C compiler: /root/miniconda3/envs/dla/bin/mpicc MPI C++ compiler: /root/miniconda3/envs/dla/bin/mpicxx MPI F compiler: /root/miniconda3/envs/dla/bin/mpifort MPI F90 compiler: /root/miniconda3/envs/dla/bin/mpif90 MPI F77 compiler: /root/miniconda3/envs/dla/bin/mpif77 checking for library &#39;lmpe&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o building &#39;mpe&#39; dylib library creating build/temp.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/src creating build/temp.linux-x86_64-3.6/src/lib-pmpi /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.6/src/lib-pmpi/mpe.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- warning: build_clib: command &#39;/root/miniconda3/envs/dla/bin/mpicc&#39; failed with exit status 1 warning: build_clib: building optional library "mpe" failed checking for library &#39;vt-mpi&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o checking for library &#39;vt.mpi&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o building &#39;vt&#39; dylib library /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.6/src/lib-pmpi/vt.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- warning: build_clib: command &#39;/root/miniconda3/envs/dla/bin/mpicc&#39; failed with exit status 1 warning: build_clib: building optional library "vt" failed checking for library &#39;vt-mpi&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o checking for library &#39;vt.mpi&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o building &#39;vt-mpi&#39; dylib library /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.6/src/lib-pmpi/vt-mpi.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- warning: build_clib: command &#39;/root/miniconda3/envs/dla/bin/mpicc&#39; failed with exit status 1 warning: build_clib: building optional library "vt-mpi" failed checking for library &#39;vt-hyb&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o checking for library &#39;vt.ompi&#39; ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o building &#39;vt-hyb&#39; dylib library /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.6/src/lib-pmpi/vt-hyb.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- warning: build_clib: command &#39;/root/miniconda3/envs/dla/bin/mpicc&#39; failed with exit status 1 warning: build_clib: building optional library "vt-hyb" failed running build_ext MPI configuration: [mpi] from &#39;mpi.cfg&#39; MPI C compiler: /root/miniconda3/envs/dla/bin/mpicc MPI C++ compiler: /root/miniconda3/envs/dla/bin/mpicxx MPI F compiler: /root/miniconda3/envs/dla/bin/mpifort MPI F90 compiler: /root/miniconda3/envs/dla/bin/mpif90 MPI F77 compiler: /root/miniconda3/envs/dla/bin/mpif77 checking for dlopen() availability ... checking for header &#39;dlfcn.h&#39; ... gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/root/miniconda3/envs/dla/include/python3.6m -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for library &#39;dl&#39; ... gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/root/miniconda3/envs/dla/include/python3.6m -c _configtest.c -o _configtest.o gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.6 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function &#39;dlopen&#39; ... gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/root/miniconda3/envs/dla/include/python3.6m -c _configtest.c -o _configtest.o gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.6 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest building &#39;mpi4py.dl&#39; extension gcc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/root/miniconda3/envs/dla/include/python3.6m -c src/dynload.c -o build/temp.linux-x86_64-3.6/src/dynload.o gcc -pthread -shared -B /root/miniconda3/envs/dla/compiler_compat -L/root/miniconda3/envs/dla/lib -Wl,-rpath=/root/miniconda3/envs/dla/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/src/dynload.o -Lbuild/temp.linux-x86_64-3.6 -ldl -o build/lib.linux-x86_64-3.6/mpi4py/dl.cpython-36m-x86_64-linux-gnu.so checking for MPI compile and link ... /root/miniconda3/envs/dla/bin/mpicc -pthread -B /root/miniconda3/envs/dla/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/root/miniconda3/envs/dla/include/python3.6m -c _configtest.c -o _configtest.o -------------------------------------------------------------------------- The Open MPI wrapper compiler was unable to find the specified compiler x86_64-conda-linux-gnu-cc in your PATH. Note that this compiler was either specified at configure time or in one of several possible environment variables. -------------------------------------------------------------------------- failure. removing: _configtest.c _configtest.o error: Cannot compile MPI programs. Check your configuration!!! ---------------------------------------- ERROR: Command errored out with exit status 1: /root/miniconda3/envs/dla/bin/python3.6 -u -c &#39;import io, os, sys, setuptools, tokenize; sys.argv[0] = &#39;"&#39;"&#39;/tmp/pip-install-lw95xiq4/mpi4py_8b91087d72f84b52b99093b4f331a6c6/setup.py&#39;"&#39;"&#39;; __file__=&#39;"&#39;"&#39;/tmp/pip-install-lw95xiq4/mpi4py_8b91087d72f84b52b99093b4f331a6c6/setup.py&#39;"&#39;"&#39;;f = getattr(tokenize, &#39;"&#39;"&#39;open&#39;"&#39;"&#39;, open)(__file__) if os.path.exists(__file__) else io.StringIO(&#39;"&#39;"&#39;from setuptools import setup; setup()&#39;"&#39;"&#39;);code = f.read().replace(&#39;"&#39;"&#39;\r\n&#39;"&#39;"&#39;, &#39;"&#39;"&#39;\n&#39;"&#39;"&#39;);f.close();exec(compile(code, __file__, &#39;"&#39;"&#39;exec&#39;"&#39;"&#39;))&#39; install --record /tmp/pip-record-tvroj_hd/install-record.txt --single-version-externally-managed --compile --install-headers /root/miniconda3/envs/dla/include/python3.6m/mpi4py Check the logs for full command output.
最新发布
06-25
评论
添加红包

请填写红包祝福语或标题

红包个数最小为10个

红包金额最低5元

当前余额3.43前往充值 >
需支付:10.00
成就一亿技术人!
领取后你会自动成为博主和红包主的粉丝 规则
hope_wisdom
发出的红包
实付
使用余额支付
点击重新获取
扫码支付
钱包余额 0

抵扣说明:

1.余额是钱包充值的虚拟货币,按照1:1的比例进行支付金额的抵扣。
2.余额无法直接购买下载,可以购买VIP、付费专栏及课程。

余额充值