LightDock：高效蛋白质-DNA对接框架

GitHub - lightdock/lightdock: Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

lightdock - 大分子对接框架_PyPI中文网

蛋白质-DNA 对接 | LightDock --- Protein-DNA Docking | LightDock

先学会后应用~

1.下载安装相关包~

lightdock

pip3 install lightdock -i https://pypi.tuna.tsinghua.edu.cn/simple

git clone https://github.com/lightdock/lightdock.git

cd lightdock
pip install -e .

# LightDock
export LIGHTDOCK_HOME="/path/to/lightdock"
export PATH=$PATH:$LIGHTDOCK_HOME/bin
export PYTHONPATH=$PYTHONPATH:$LIGHTDOCK_HOME

reduce

git clone https://github.com/rlabduke/reduce.git

使用cmake 

mkdir -p ~/build/reduce
cd ~/build/reduce
cmake ~/src/reduce
make
sudo make install

PDB-Tools

Python 包 GitHub -