G-BLASTN是一款基于NCBI-BLAST的GPU加速核酸比对工具，能产生与NCBI-BLAST完全相同的比对结果，并且用户命令非常相似。它还支持管道模式，能够充分利用GPU和CPU资源来处理中等到大规模的批量查询任务。目前，G-BLASTN支持NCBI-BLAST的blastn和megablast模式。
http://www.comp.hkbu.edu.hk/~chxw/software/G-BLASTN.html
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST. G-BLASTN can produce exactly the same results as NCBI-BLAST, and it also has very similar user commands. It also supports a pipeline mode, which can fully use the GPU and CPU resources when handling a batch of medium to large sized queries. Currently, G_BLASTN supports the blastn and megablast modes of NCBI-BLAST. The discontiguous megablast mode is not supported yet.
G-BLASTN is free software and you can browse/download the source code at sourceforge.net or github.
The current version of G-BLASTN is v1.1.
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